Package: PatientGenerator 0.1.4

Cesar Barboza

PatientGenerator: Generator of Synthetic Patient Data for the OMOP Common Data Model

Tools to generate synthetic patient-level test datasets in the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM). Includes a chat-driven generator backed by large language models and an interactive 'shiny' designer for editing CDM test sets.

Authors:Cesar Barboza [aut, cre], Ger Inberg [aut], Adam Black [aut]

PatientGenerator_0.1.4.tar.gz
PatientGenerator_0.1.4.zip(r-4.7)PatientGenerator_0.1.4.zip(r-4.6)PatientGenerator_0.1.4.zip(r-4.5)
PatientGenerator_0.1.4.tgz(r-4.6-any)PatientGenerator_0.1.4.tgz(r-4.5-any)
PatientGenerator_0.1.4.tar.gz(r-4.7-any)PatientGenerator_0.1.4.tar.gz(r-4.6-any)
PatientGenerator_0.1.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PatientGenerator/json (API)

# Install 'PatientGenerator' in R:

install.packages('PatientGenerator', repos = c('https://ohdsi.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mi-erasmusmc/patientgenerator/issues

On CRAN:

4.65 score 3 stars 5 scripts 256 downloads 10 exports 79 dependencies

Last updated from:472cfeb361. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	189
source / vignettes	OK	219
linux-release-x86_64	OK	150
macos-release-arm64	OK	113
macos-oldrel-arm64	OK	99
windows-devel	OK	96
windows-release	OK	93
windows-oldrel	OK	97
wasm-release	OK	131

Exports:%||%availableModels conceptSearchServer conceptSearchUI getTestSets hecateClient hecateSearch patientChat patientChatNaive patientDesigner

Dependencies:askpass backports base64enc brio bslib cachem callr checkmate cli commonmark coro crayon crosstalk curl data.table DBI desc diffobj digest dplyr DT duckdb ellmer evaluate fastmap fontawesome fs generics glue highr htmltools htmlwidgets httpuv httr2 jquerylib jsonlite knitr later lazyeval lifecycle magrittr memoise mime openssl otel pillar pkgbuild pkgconfig pkgload praise processx promises ps r2d3 R6 rappdirs Rcpp rlang rmarkdown rprojroot rstudioapi S7 sass shiny sourcetools stringi stringr sys testthat tibble tidyselect tinytex utf8 vctrs waldo withr xfun xtable yaml

Interactive Patient Designer & Test Integration

Introduction | Operating the Patient Designer | Saving Test Sets for testthat Integration | Integrating with testthat

Rendered fromshiny-integration.Rmdusingknitr::rmarkdown

Last update: 2026-04-27
Started: 2026-04-27

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
'availableModels()' If the API key is valid in the system, returns available models to the user from the LLM provider.	availableModels
Concept search Shiny module	conceptSearchModule conceptSearchServer conceptSearchUI
Useful to list available datasets in the testCases folder	getTestSets
Create a Hecate API client	hecateClient
Search Hecate concepts and return results as a data frame	hecateSearch
Null coalescing operator	%\|\|% nullOr
'patientChat()' generates synthetic patients in the OMOP-CDM using an LLM API.	patientChat
'patientChatNaive()' is a grapper for the ellmer package to send prompts and send the output test set to an LLM. Requires a valid API key.	patientChatNaive
'patientDesigner()' is a visual interface based on D3 to construct test datasets for the OMOP-CDM	patientDesigner