Phenotype diagnosticsUpdated 15 days ago

Edward Burn

Rendered from PhenotypeDiagnostics.Rmd in PhenotypeR 0.5.0.
Using Characterization PackageUpdated 20 days ago

Jenna Reps

Rendered from UsingPackage.Rmd in Characterization 3.0.1.
Using Observational Health Data Sciences and Informatics (OHDSI) Report GeneratorUpdated 20 days ago

Jenna Reps, Anthony Sena

Rendered from ExampleCode.Rmd in OhdsiReportGenerator 2.2.0.
Interactive Patient Designer & Test IntegrationUpdated 1 months ago

Cesar Barboza

Rendered from shiny-integration.Rmd in PatientGenerator 0.1.4.
CreateDescriptionsUpdated 2 months ago

Edward Burn

Rendered from CreateDescriptions.Rmd in PhenotypeR 0.5.0.
Shiny diagnosticsUpdated 2 months ago

Edward Burn

Rendered from ShinyDiagnostics.Rmd in PhenotypeR 0.5.0.
Phenotype expectationsUpdated 2 months ago

Edward Burn

Rendered from PhenotypeExpectations.Rmd in PhenotypeR 0.5.0.
Subsetting conceptsUpdated 2 months ago

Mike Du

Rendered from subset_concepts.Rmd in omock 0.6.2.9000.
Achilles tablesUpdated 2 months ago

Martí Català

Rendered from achilles.Rmd in OmopConstructor 0.3.0.
Getting StartedUpdated 2 months ago

Clair Blacketer

Rendered from DataQualityDashboard.rmd in DataQualityDashboard 2.8.9.
Characterization Package SpecificationUpdated 3 months ago

Jenna Reps

Rendered from Specification.Rmd in Characterization 3.0.1.
Single studies using the CohortMethod packageUpdated 3 months ago

Martijn J. Schuemie, Marc A. Suchard and Patrick Ryan

Rendered from SingleStudies.Rmd in CohortMethod 6.0.2.
Adding Custom Patient-Level Prediction AlgorithmsUpdated 3 months ago

Jenna Reps, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek

Rendered from AddingCustomModels.Rmd in PatientLevelPrediction 6.6.0.
Creating mock clinical tablesUpdated 3 months ago

Mike Du

Rendered from synthetic_clinical_tables.Rmd in omock 0.6.2.9000.
Creating mock cohortsUpdated 3 months ago

Mike Du

Rendered from synthetic_cohorts.Rmd in omock 0.6.2.9000.
Synthetic datasetsUpdated 3 months ago

Mike Du

Rendered from synthetic_datasets.Rmd in omock 0.6.2.9000.
Creating mock vocabulary tablesUpdated 3 months ago

Mike Du

Rendered from synthetic_vocabulary.Rmd in omock 0.6.2.9000.
LocalControl: An R Package for Comparative Safety and Effectiveness ResearchUpdated 3 months ago

Christophe G. Lambert

Rendered from LocalControl-jss-2020.pdf.asis in LocalControl 1.1.7.
Creating Cohort Subset DefinitionsUpdated 4 months ago

James P. Gilbert, Freddy Avila Cruz and Anthony G. Sena

Rendered from CreatingCohortSubsetDefinitions.Rmd in CohortGenerator 1.1.0.
Generating CohortsUpdated 4 months ago

Anthony G. Sena and Martijn J. Schuemie

Rendered from GeneratingCohorts.Rmd in CohortGenerator 1.1.0.
Using Template CohortsUpdated 4 months ago

James P. Gilbert

Rendered from UsingTemplateCohorts.Rmd in CohortGenerator 1.1.0.
Cohort-specific measurement diagnosticsUpdated 4 months ago

Nuria Mercade-Besora

Rendered from a02_summariseCohortMeasurementUse.Rmd in MeasurementDiagnostics 0.3.0.9.
Summarising measurement use in a datasetUpdated 4 months ago

Nuria Mercade-Besora

Rendered from a01_summariseMeasurementUse.Rmd in MeasurementDiagnostics 0.3.0.9.
Results VisualisationUpdated 4 months ago

Nuria Mercade-Besora

Rendered from a03_resultsVisualisation.Rmd in MeasurementDiagnostics 0.3.0.9.
Add a New Data Quality CheckUpdated 5 months ago

Don Torok

Rendered from AddNewCheck.rmd in DataQualityDashboard 2.8.9.
Building base cohortsUpdated 5 months ago

Edward Burn

Rendered from a01_building_base_cohorts.Rmd in CohortConstructor 0.6.3.900.
Connecting to a databaseUpdated 5 months ago

Martijn J. Schuemie

Rendered from Connecting.Rmd in DatabaseConnector 7.1.0.
Applying cohort table requirementsUpdated 5 months ago

Edward Burn

Rendered from a02_cohort_table_requirements.Rmd in CohortConstructor 0.6.3.900.
Applying demographic requirements to a cohortUpdated 5 months ago

Edward Burn

Rendered from a03_require_demographics.Rmd in CohortConstructor 0.6.3.900.
Updating cohort start and end datesUpdated 5 months ago

Edward Burn

Rendered from a05_update_cohort_start_end.Rmd in CohortConstructor 0.6.3.900.
Running multiple analyses at once using the CohortMethod packageUpdated 6 months ago

Martijn J. Schuemie, Marc A. Suchard and Patrick Ryan

Rendered from MultipleAnalyses.Rmd in CohortMethod 6.0.2.
Results schema of the CohortMethod packageUpdated 7 months ago

Martijn J. Schuemie

Rendered from ResultsSchema.Rmd in CohortMethod 6.0.2.
Sampling CohortsUpdated 7 months ago

James P. Gilbert

Rendered from SamplingCohorts.Rmd in CohortGenerator 1.1.0.
Summarise database characteristicsUpdated 7 months ago

Cecilia Campanile

Rendered from database_characteristics.Rmd in OmopSketch 1.0.1.900.
Behind the scenesUpdated 7 months ago

Edward Burn

Rendered from a12_behind_the_scenes.Rmd in CohortConstructor 0.6.3.900.
Building a mock from dataUpdated 7 months ago

Mike Du

Rendered from mock_from_tables.Rmd in omock 0.6.2.9000.
Applying requirements related to other cohorts, concept sets, or tablesUpdated 8 months ago

Edward Burn

Rendered from a04_require_intersections.Rmd in CohortConstructor 0.6.3.900.
Concatenating cohort recordsUpdated 8 months ago

Edward Burn

Rendered from a06_concatanate_cohorts.Rmd in CohortConstructor 0.6.3.900.
Filtering cohortsUpdated 8 months ago

Edward Burn

Rendered from a07_filter_cohorts.Rmd in CohortConstructor 0.6.3.900.
Combining CohortsUpdated 8 months ago

Edward Burn

Rendered from a09_combine_cohorts.Rmd in CohortConstructor 0.6.3.900.
Splitting cohortsUpdated 8 months ago

Edward Burn

Rendered from a08_split_cohorts.Rmd in CohortConstructor 0.6.3.900.
CohortConstructor benchmarking resultsUpdated 8 months ago

Edward Burn

Rendered from a11_benchmark.Rmd in CohortConstructor 0.6.3.900.
Generating a matched cohortUpdated 8 months ago

Edward Burn

Rendered from a10_match_cohorts.Rmd in CohortConstructor 0.6.3.900.
Generating the Observation Period TableUpdated 9 months ago

Martí Català

Rendered from buildObservationPeriod.Rmd in OmopConstructor 0.3.0.
Using python for postrgresql uploadsUpdated 9 months ago

James P. Gilbert

Rendered from UsingPythonUploads.Rmd in ResultModelManager 0.6.2.
Results schema of the SelfControlledCaseSeries packageUpdated 9 months ago

Martijn J. Schuemie

Rendered from ResultsSchema.Rmd in SelfControlledCaseSeries 6.1.5.
Check Status DefinitionsUpdated 9 months ago

Dmitry Ilyn, Maxim Moinat

Rendered from CheckStatusDefinitions.rmd in DataQualityDashboard 2.8.9.
Failure Thresholds and How to Change ThemUpdated 9 months ago

Clair Blacketer

Rendered from Thresholds.rmd in DataQualityDashboard 2.8.9.
Running the DQD in SqlOnly modeUpdated 9 months ago

Maxim Moinat

Rendered from SqlOnly.rmd in DataQualityDashboard 2.8.9.
Running the DQD on a CohortUpdated 9 months ago

Clair Blacketer

Rendered from DqdForCohorts.rmd in DataQualityDashboard 2.8.9.
Code used in the video vignetteUpdated 9 months ago

Martijn Schuemie

Rendered from VideoVignette.Rmd in EvidenceSynthesis 1.1.0.
Bayesian adaptive bias correction using profile likelihoodsUpdated 9 months ago

Fan Bu

Rendered from BayesianBiasCorrection.Rmd in EvidenceSynthesis 1.1.0.
Building patient-level predictive modelsUpdated 11 months ago

Jenna Reps, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek

Rendered from BuildingPredictiveModels.Rmd in PatientLevelPrediction 6.6.0.
Creating Learning CurvesUpdated 11 months ago

Luis H. John, Jenna M. Reps, Peter R. Rijnbeek

Rendered from CreatingLearningCurves.Rmd in PatientLevelPrediction 6.6.0.
Effect estimate synthesis using non-normal likelihood approximationsUpdated 11 months ago

Martijn J. Schuemie

Rendered from NonNormalEffectSynthesis.Rmd in EvidenceSynthesis 1.1.0.
Dynamic appUpdated 11 months ago

Martí Català

Rendered from dynamic_app.Rmd in OmopViewer 0.7.0.
Customise your static shinyUpdated 11 months ago

Martí Català

Rendered from edit_static_content.Rmd in OmopViewer 0.7.0.
Create a static shiny appUpdated 11 months ago

Martí Català

Rendered from export_static_app.Rmd in OmopViewer 0.7.0.
Getting startedUpdated 11 months ago

Edward Burn

Rendered from a01_getting_started.Rmd in OmopOnSpark 0.1.0.
Creating the OMOP CDM on SparkUpdated 11 months ago

Edward Burn

Rendered from a02_Creating_the_OMOP_CDM_on_Spark.Rmd in OmopOnSpark 0.1.0.
Creating a cdm reference using SparkUpdated 11 months ago

Edward Burn

Rendered from a03_creating_a_cdm_reference.Rmd in OmopOnSpark 0.1.0.
Running multiple analyses at once using the SelfControlledCaseSeries packageUpdated 12 months ago

Martijn J. Schuemie

Rendered from MultipleAnalyses.Rmd in SelfControlledCaseSeries 6.1.5.
Single studies using the SelfControlledCaseSeries packageUpdated 12 months ago

Martijn J. Schuemie, Marc A. Suchard and Patrick Ryan

Rendered from SingleStudies.Rmd in SelfControlledCaseSeries 6.1.5.
Creating custom covariate buildersUpdated 1 years ago

Martijn J. Schuemie

Rendered from CreatingCustomCovariateBuilders.Rmd in FeatureExtraction 3.13.0.
IntroductionUpdated 1 years ago

Edward Burn

Rendered from a00_introduction.Rmd in CohortConstructor 0.6.3.900.
Parallel execution using ParallelLoggerUpdated 1 years ago

Martijn J. Schuemie

Rendered from Parallel.Rmd in ParallelLogger 3.5.1.
Step 1. Generate a sequence cohortUpdated 1 years ago

Xihang Chen

Rendered from a02_Generate_a_sequence_cohort.Rmd in CohortSymmetry 0.2.4.
Step 2. Obtain the sequence ratiosUpdated 1 years ago

Xihang Chen

Rendered from a03_Summarise_sequence_ratios.Rmd in CohortSymmetry 0.2.4.
Step 3. Visualise the sequence ratiosUpdated 1 years ago

Xihang Chen

Rendered from a04_Visualise_sequence_ratios.Rmd in CohortSymmetry 0.2.4.
Step 4: Obtain aggregated data on temporal symmetryUpdated 1 years ago

Xihang Chen

Rendered from a05_Summarise_temporal_symmetry.Rmd in CohortSymmetry 0.2.4.
Step 5: Visualise temporal symmetryUpdated 1 years ago

Xihang Chen

Rendered from a06_Visualise_temporal_symmetry.Rmd in CohortSymmetry 0.2.4.
Automatically Build Multiple Patient-Level Predictive ModelsUpdated 1 years ago

Jenna Reps, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek

Rendered from BuildingMultiplePredictiveModels.Rmd in PatientLevelPrediction 6.6.0.
Best Practice ResearchUpdated 1 years ago

Jenna Reps, Peter R. Rijnbeek

Rendered from BestPractices.Rmd in PatientLevelPrediction 6.6.0.
Clinical ModelsUpdated 1 years ago

Jenna Reps, Peter R. Rijnbeek

Rendered from ClinicalModels.Rmd in PatientLevelPrediction 6.6.0.
Patient-Level Prediction Installation GuideUpdated 1 years ago

Jenna Reps, Peter R. Rijnbeek, Egill Fridgeirsson

Rendered from InstallationGuide.Rmd in PatientLevelPrediction 6.6.0.
Adding Custom Data SplittingUpdated 1 years ago

Jenna Reps

Rendered from AddingCustomSplitting.Rmd in PatientLevelPrediction 6.6.0.
Adding Custom Feature Engineering FunctionsUpdated 1 years ago

Jenna Reps, Egill Fridgeirsson

Rendered from AddingCustomFeatureEngineering.Rmd in PatientLevelPrediction 6.6.0.
Adding Custom Sampling FunctionsUpdated 1 years ago

Jenna Reps

Rendered from AddingCustomSamples.Rmd in PatientLevelPrediction 6.6.0.
Benchmark TasksUpdated 1 years ago

Jenna Reps, Ross Williams, Peter R. Rijnbeek

Rendered from BenchmarkTasks.Rmd in PatientLevelPrediction 6.6.0.
Constrained PredictorsUpdated 1 years ago

Jenna Reps

Rendered from ConstrainedPredictors.Rmd in PatientLevelPrediction 6.6.0.
Integration of GIS Data Into OHDSI Model BuildingUpdated 1 years ago

Jared Houghtaling

Rendered from GISExample.Rmd in PatientLevelPrediction 6.6.0.
Making patient-level predictive network study packagesUpdated 1 years ago

Jenna Reps, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek

Rendered from CreatingNetworkStudies.Rmd in PatientLevelPrediction 6.6.0.
Using AndromedaUpdated 1 years ago

Martijn J. Schuemie

Rendered from UsingAndromeda.Rmd in Andromeda 1.2.0.
Introduction to CohortSymmetryUpdated 2 years ago

Xihang Chen

Rendered from a01_Introduction.Rmd in CohortSymmetry 0.2.4.
Using SqlRenderUpdated 2 years ago

Martijn J. Schuemie

Rendered from UsingSqlRender.Rmd in SqlRender 1.19.5.
Logging using ParallelLoggerUpdated 2 years ago

Martijn J. Schuemie

Rendered from Logging.Rmd in ParallelLogger 3.5.1.
Using FeatureExtractionUpdated 2 years ago

Martijn J. Schuemie

Rendered from UsingFeatureExtraction.Rmd in FeatureExtraction 3.13.0.
Using FeatureExtraction (Korean)Updated 2 years ago

Jeon Ga Bin & Martijn J. Schuemie

Rendered from UsingFeatureExtractionKorean.Rmd in FeatureExtraction 3.13.0.
Creating covariates using cohort attributesUpdated 2 years ago

Martijn J. Schuemie

Rendered from CreatingCovariatesUsingCohortAttributes.Rmd in FeatureExtraction 3.13.0.
Creating custom covariate builders (Korean)Updated 2 years ago

Jeon Ga Bin & Martijn J. Schuemie

Rendered from CreatingCustomCovariateBuildersKorean.Rmd in FeatureExtraction 3.13.0.
Creating MigrationsUpdated 3 years ago

James P. Gilbert

Rendered from CreatingMigrations.Rmd in ResultModelManager 0.6.2.
Package DesignUpdated 3 years ago

James P. Gilbert

Rendered from PackageDesign.Rmd in ResultModelManager 0.6.2.
Upload FunctionalityUpdated 3 years ago

James P. Gilbert

Rendered from UploadFunctionality.Rmd in ResultModelManager 0.6.2.
Using An Export ManagerUpdated 3 years ago

James P. Gilbert

Rendered from UsingAnExportManager.Rmd in ResultModelManager 0.6.2.
Using Query NamespacesUpdated 3 years ago

James P. Gilbert

Rendered from UsingQueryNamespaces.Rmd in ResultModelManager 0.6.2.
Creating covariates based on other cohortsUpdated 3 years ago

Martijn J. Schuemie

Rendered from CreatingCovariatesBasedOnOtherCohorts.Rmd in FeatureExtraction 3.13.0.
Querying a databaseUpdated 3 years ago

Martijn J. Schuemie

Rendered from Querying.Rmd in DatabaseConnector 7.1.0.
Using DatabaseConnector through DBI and dbplyrUpdated 3 years ago

Martijn J. Schuemie

Rendered from DbiAndDbplyr.Rmd in DatabaseConnector 7.1.0.
Using Connection HandlersUpdated 4 years ago

James P. Gilbert

Rendered from UsingConnectionHandlers.Rmd in ResultModelManager 0.6.2.
Empirical calibration and MaxSPRTUpdated 4 years ago

Martijn J. Schuemie

Rendered from EmpiricalMaxSprtCalibrationVignette.Rmd in EmpiricalCalibration 3.1.4.
Empirical calibration of confidence intervalsUpdated 4 years ago

Martijn J. Schuemie, Marc A. Suchard

Rendered from EmpiricalCiCalibrationVignette.Rmd in EmpiricalCalibration 3.1.4.
Empirical calibration of p-valuesUpdated 4 years ago

Martijn J. Schuemie, Marc A. Suchard

Rendered from EmpiricalPCalibrationVignette.Rmd in EmpiricalCalibration 3.1.4.