R packages by ohdsi

Characterization Package SpecificationUpdated 5 days ago

Jenna Reps

Rendered from Specification.Rmd in Characterization 2.1.3.

Using Characterization PackageUpdated 5 days ago

Jenna Reps

Rendered from UsingPackage.Rmd in Characterization 2.1.3.

Step 1. Generate a sequence cohortUpdated 8 days ago

Xihang Chen

Rendered from a02_Generate_a_sequence_cohort.Rmd in CohortSymmetry 0.2.3.

Step 2. Obtain the sequence ratiosUpdated 8 days ago

Xihang Chen

Rendered from a03_Summarise_sequence_ratios.Rmd in CohortSymmetry 0.2.3.

Step 3. Visualise the sequence ratiosUpdated 8 days ago

Xihang Chen

Rendered from a04_Visualise_sequence_ratios.Rmd in CohortSymmetry 0.2.3.

Step 4: Obtain aggregated data on temporal symmetryUpdated 8 days ago

Xihang Chen

Rendered from a05_Summarise_temporal_symmetry.Rmd in CohortSymmetry 0.2.3.

Step 5: Visualise temporal symmetryUpdated 8 days ago

Xihang Chen

Rendered from a06_Visualise_temporal_symmetry.Rmd in CohortSymmetry 0.2.3.

Characterisation of OMOP CDMUpdated 8 days ago

Cecilia Campanile

Rendered from characterisation.Rmd in OmopSketch 0.3.0.

Summarise clinical tables recordsUpdated 8 days ago

Cecilia Campanile

Rendered from summarise_clinical_tables_records.Rmd in OmopSketch 0.3.0.

Summarise concept countsUpdated 8 days ago

Cecilia Campanile

Rendered from summarise_concept_set_counts.Rmd in OmopSketch 0.3.0.

Summarise observation periodUpdated 8 days ago

Cecilia Campanile

Rendered from summarise_observation_period.Rmd in OmopSketch 0.3.0.

Using Characterization PackageUpdated 9 days ago

Jenna Reps

Rendered from UsingPackage.Rmd in Characterization 2.1.3.

Using Observational Health Data Sciences and Informatics (OHDSI) Report GeneratorUpdated 11 days ago

Jenna Reps, Anthony Sena

Rendered from ExampleCode.Rmd in OhdsiReportGenerator 1.0.1.

Behind the scenesUpdated 15 days ago

Edward Burn

Rendered from a12_behind_the_scenes.Rmd in CohortConstructor 0.3.5.

Codelist diagnosticsUpdated 18 days ago

Edward Burn

Rendered from a02_CodelistDiagnostics.Rmd in PhenotypeR 0.1.3.

Characterization Package SpecificationUpdated 18 days ago

Jenna Reps

Rendered from Specification.Rmd in Characterization 2.1.3.

Using Observational Health Data Sciences and Informatics (OHDSI) Report GeneratorUpdated 18 days ago

Jenna Reps, Anthony Sena

Rendered from ExampleCode.Rmd in OhdsiReportGenerator 1.0.1.

Database diagnosticsUpdated 20 days ago

Edward Burn

Rendered from a01_DatabaseDiagnostics.Rmd in PhenotypeR 0.1.3.

Cohort diagnosticsUpdated 20 days ago

Edward Burn

Rendered from a03_CohortDiagnostics.Rmd in PhenotypeR 0.1.3.

Matched diagnosticsUpdated 20 days ago

Edward Burn

Rendered from a04_MatchedDiagnostics.Rmd in PhenotypeR 0.1.3.

PopulationDiagnosticsUpdated 20 days ago

Edward Burn

Rendered from a05_PopulationDiagnostics.Rmd in PhenotypeR 0.1.3.

Concatenating cohort recordsUpdated 20 days ago

Edward Burn

Rendered from a06_concatanate_cohorts.Rmd in CohortConstructor 0.3.5.

Splitting cohortsUpdated 20 days ago

Edward Burn

Rendered from a08_split_cohorts.Rmd in CohortConstructor 0.3.5.

Combining CohortsUpdated 20 days ago

Edward Burn

Rendered from a09_combine_cohorts.Rmd in CohortConstructor 0.3.5.

Automatically Build Multiple Patient-Level Predictive ModelsUpdated 26 days ago

Jenna Reps, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek

Rendered from BuildingMultiplePredictiveModels.Rmd in PatientLevelPrediction 6.4.0.

Best Practice ResearchUpdated 26 days ago

Jenna Reps, Peter R. Rijnbeek

Rendered from BestPractices.Rmd in PatientLevelPrediction 6.4.0.

Building patient-level predictive modelsUpdated 26 days ago

Jenna Reps, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek

Rendered from BuildingPredictiveModels.Rmd in PatientLevelPrediction 6.4.0.

Clinical ModelsUpdated 26 days ago

Jenna Reps, Peter R. Rijnbeek

Rendered from ClinicalModels.Rmd in PatientLevelPrediction 6.4.0.

Creating Learning CurvesUpdated 26 days ago

Luis H. John, Jenna M. Reps, Peter R. Rijnbeek

Rendered from CreatingLearningCurves.Rmd in PatientLevelPrediction 6.4.0.

Patient-Level Prediction Installation GuideUpdated 26 days ago

Jenna Reps, Peter R. Rijnbeek, Egill Fridgeirsson

Rendered from InstallationGuide.Rmd in PatientLevelPrediction 6.4.0.

Adding Custom Data SplittingUpdated 26 days ago

Jenna Reps

Rendered from AddingCustomSplitting.Rmd in PatientLevelPrediction 6.4.0.

Adding Custom Feature Engineering FunctionsUpdated 26 days ago

Jenna Reps, Egill Fridgeirsson

Rendered from AddingCustomFeatureEngineering.Rmd in PatientLevelPrediction 6.4.0.

Adding Custom Patient-Level Prediction AlgorithmsUpdated 26 days ago

Jenna Reps, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek

Rendered from AddingCustomModels.Rmd in PatientLevelPrediction 6.4.0.

Adding Custom Sampling FunctionsUpdated 26 days ago

Jenna Reps

Rendered from AddingCustomSamples.Rmd in PatientLevelPrediction 6.4.0.

Automatically Build Multiple Patient-Level Predictive ModelsUpdated 26 days ago

Jenna Reps, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek

Rendered from BuildingMultiplePredictiveModels.Rmd in PatientLevelPrediction 6.4.0.

Benchmark TasksUpdated 26 days ago

Jenna Reps, Ross Williams, Peter R. Rijnbeek

Rendered from BenchmarkTasks.Rmd in PatientLevelPrediction 6.4.0.

Best Practice ResearchUpdated 26 days ago

Jenna Reps, Peter R. Rijnbeek

Rendered from BestPractices.Rmd in PatientLevelPrediction 6.4.0.

Building patient-level predictive modelsUpdated 26 days ago

Jenna Reps, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek

Rendered from BuildingPredictiveModels.Rmd in PatientLevelPrediction 6.4.0.

Clinical ModelsUpdated 26 days ago

Jenna Reps, Peter R. Rijnbeek

Rendered from ClinicalModels.Rmd in PatientLevelPrediction 6.4.0.

Constrained PredictorsUpdated 26 days ago

Jenna Reps

Rendered from ConstrainedPredictors.Rmd in PatientLevelPrediction 6.4.0.

Creating Learning CurvesUpdated 26 days ago

Luis H. John, Jenna M. Reps, Peter R. Rijnbeek

Rendered from CreatingLearningCurves.Rmd in PatientLevelPrediction 6.4.0.

Integration of GIS Data Into OHDSI Model BuildingUpdated 26 days ago

Jared Houghtaling

Rendered from GISExample.Rmd in PatientLevelPrediction 6.4.0.

Making patient-level predictive network study packagesUpdated 26 days ago

Jenna Reps, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek

Rendered from CreatingNetworkStudies.Rmd in PatientLevelPrediction 6.4.0.

Patient-Level Prediction Installation GuideUpdated 26 days ago

Jenna Reps, Peter R. Rijnbeek, Egill Fridgeirsson

Rendered from InstallationGuide.Rmd in PatientLevelPrediction 6.4.0.

Adding Custom Data SplittingUpdated 1 months ago

Jenna Reps

Rendered from AddingCustomSplitting.Rmd in PatientLevelPrediction 6.4.0.

Adding Custom Feature Engineering FunctionsUpdated 1 months ago

Jenna Reps, Egill Fridgeirsson

Rendered from AddingCustomFeatureEngineering.Rmd in PatientLevelPrediction 6.4.0.

Adding Custom Patient-Level Prediction AlgorithmsUpdated 1 months ago

Jenna Reps, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek

Rendered from AddingCustomModels.Rmd in PatientLevelPrediction 6.4.0.

Adding Custom Sampling FunctionsUpdated 1 months ago

Jenna Reps

Rendered from AddingCustomSamples.Rmd in PatientLevelPrediction 6.4.0.

Benchmark TasksUpdated 1 months ago

Jenna Reps, Ross Williams, Peter R. Rijnbeek

Rendered from BenchmarkTasks.Rmd in PatientLevelPrediction 6.4.0.

Constrained PredictorsUpdated 1 months ago

Jenna Reps

Rendered from ConstrainedPredictors.Rmd in PatientLevelPrediction 6.4.0.

Integration of GIS Data Into OHDSI Model BuildingUpdated 1 months ago

Jared Houghtaling

Rendered from GISExample.Rmd in PatientLevelPrediction 6.4.0.

Making patient-level predictive network study packagesUpdated 1 months ago

Jenna Reps, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek

Rendered from CreatingNetworkStudies.Rmd in PatientLevelPrediction 6.4.0.

CohortConstructor benchmarking resultsUpdated 1 months ago

Edward Burn

Rendered from a11_benchmark.Rmd in CohortConstructor 0.3.5.

Connecting to a databaseUpdated 1 months ago

Martijn J. Schuemie

Rendered from Connecting.Rmd in DatabaseConnector 6.4.0.

Filtering cohortsUpdated 2 months ago

Edward Burn

Rendered from a07_filter_cohorts.Rmd in CohortConstructor 0.3.5.

Building base cohortsUpdated 2 months ago

Edward Burn

Rendered from a01_building_base_cohorts.Rmd in CohortConstructor 0.3.5.

Applying cohort table requirementsUpdated 2 months ago

Edward Burn

Rendered from a02_cohort_table_requirements.Rmd in CohortConstructor 0.3.5.

Applying demographic requirements to a cohortUpdated 2 months ago

Edward Burn

Rendered from a03_require_demographics.Rmd in CohortConstructor 0.3.5.

Applying requirements related to other cohorts, concept sets, or tablesUpdated 2 months ago

Edward Burn

Rendered from a04_require_intersections.Rmd in CohortConstructor 0.3.5.

Generating a matched cohortUpdated 2 months ago

Edward Burn

Rendered from a10_match_cohorts.Rmd in CohortConstructor 0.3.5.

Introduction to CohortSymmetryUpdated 3 months ago

Xihang Chen

Rendered from a01_Introduction.Rmd in CohortSymmetry 0.2.3.

LocalControl-jss-2020Updated 4 months ago

Christophe G. Lambert

Rendered from LocalControl-jss-2020.Rnw in LocalControl 1.1.4.

Updating cohort start and end datesUpdated 5 months ago

Edward Burn

Rendered from a05_update_cohort_start_end.Rmd in CohortConstructor 0.3.5.

Plot and tables in OmopViewerUpdated 5 months ago

Martí Català

Rendered from supported_result_type.Rmd in OmopViewer 0.2.1.

Creating Cohort Subset DefinitionsUpdated 5 months ago

James P. Gilbert and Anthony G. Sena

Rendered from CreatingCohortSubsetDefinitions.Rmd in CohortGenerator 0.11.2.

Generating CohortsUpdated 5 months ago

Anthony G. Sena and Martijn J. Schuemie

Rendered from GeneratingCohorts.Rmd in CohortGenerator 0.11.2.

Sampling CohortsUpdated 5 months ago

James P. Gilbert

Rendered from SamplingCohorts.Rmd in CohortGenerator 0.11.2.

Using SqlRenderUpdated 5 months ago

Martijn J. Schuemie

Rendered from UsingSqlRender.Rmd in SqlRender 1.19.1.

Creating synthetic clinical tablesUpdated 6 months ago

Mike Du

Rendered from a01_Creating_synthetic_clinical_tables.Rmd in omock 0.3.2.9000.

Logging using ParallelLoggerUpdated 7 months ago

Martijn J. Schuemie

Rendered from Logging.Rmd in ParallelLogger 3.3.1.

Creating synthetic cohortsUpdated 7 months ago

Mike Du

Rendered from a02_Creating_synthetic_cohorts.Rmd in omock 0.3.2.9000.

Building a bespoke mock cdmUpdated 7 months ago

Mike Du

Rendered from a04_Building_a_bespoke_mock_cdm.Rmd in omock 0.3.2.9000.

Creating custom covariate buildersUpdated 8 months ago

Martijn J. Schuemie

Rendered from CreatingCustomCovariateBuilders.Rmd in FeatureExtraction 3.7.2.

IntroductionUpdated 10 months ago

Edward Burn

Rendered from a00_introduction.Rmd in CohortConstructor 0.3.5.

Using FeatureExtractionUpdated 10 months ago

Martijn J. Schuemie

Rendered from UsingFeatureExtraction.Rmd in FeatureExtraction 3.7.2.

Using FeatureExtraction (Korean)Updated 10 months ago

Jeon Ga Bin & Martijn J. Schuemie

Rendered from UsingFeatureExtractionKorean.Rmd in FeatureExtraction 3.7.2.

Creating covariates using cohort attributesUpdated 11 months ago

Martijn J. Schuemie

Rendered from CreatingCovariatesUsingCohortAttributes.Rmd in FeatureExtraction 3.7.2.

Creating custom covariate builders (Korean)Updated 11 months ago

Jeon Ga Bin & Martijn J. Schuemie

Rendered from CreatingCustomCovariateBuildersKorean.Rmd in FeatureExtraction 3.7.2.

Creating a synthetic vocabularyUpdated 1 years ago

Mike Du

Rendered from a03_Creating_a_synthetic_vocabulary.Rmd in omock 0.3.2.9000.

How to use Cohort ExplorerUpdated 1 years ago

Gowtham A. Rao

Rendered from HowToUseCohortExplorer.Rmd in CohortExplorer 0.1.0.

Creating MigrationsUpdated 1 years ago

James P. Gilbert

Rendered from CreatingMigrations.Rmd in ResultModelManager 0.5.11.

Package DesignUpdated 1 years ago

James P. Gilbert

Rendered from PackageDesign.Rmd in ResultModelManager 0.5.11.

Upload FunctionalityUpdated 1 years ago

James P. Gilbert

Rendered from UploadFunctionality.Rmd in ResultModelManager 0.5.11.

Using An Export ManagerUpdated 1 years ago

James P. Gilbert

Rendered from UsingAnExportManager.Rmd in ResultModelManager 0.5.11.

Using Query NamespacesUpdated 1 years ago

James P. Gilbert

Rendered from UsingQueryNamespaces.Rmd in ResultModelManager 0.5.11.

How to Use CohortAlgebra R PackageUpdated 1 years ago

Gowtham A. Rao

Rendered from HowToUseCohortAlgebraRPackage.Rmd in CohortAlgebra 0.3.1.

Creating covariates based on other cohortsUpdated 2 years ago

Martijn J. Schuemie

Rendered from CreatingCovariatesBasedOnOtherCohorts.Rmd in FeatureExtraction 3.7.2.

Bayesian adaptive bias correction using profile likelihoodsUpdated 2 years ago

Fan Bu

Rendered from BayesianBiasCorrection.Rmd in EvidenceSynthesis 0.5.0.

Code used in the video vignetteUpdated 2 years ago

Martijn Schuemie

Rendered from VideoVignette.Rmd in EvidenceSynthesis 0.5.0.

Effect estimate synthesis using non-normal likelihood approximationsUpdated 2 years ago

Martijn J. Schuemie

Rendered from NonNormalEffectSynthesis.Rmd in EvidenceSynthesis 0.5.0.

Querying a databaseUpdated 2 years ago

Martijn J. Schuemie

Rendered from Querying.Rmd in DatabaseConnector 6.4.0.

Using DatabaseConnector through DBI and dbplyrUpdated 2 years ago

Martijn J. Schuemie

Rendered from DbiAndDbplyr.Rmd in DatabaseConnector 6.4.0.

Using Connection HandlersUpdated 2 years ago

James P. Gilbert

Rendered from UsingConnectionHandlers.Rmd in ResultModelManager 0.5.11.

Empirical calibration and MaxSPRTUpdated 3 years ago

Martijn J. Schuemie

Rendered from EmpiricalMaxSprtCalibrationVignette.Rmd in EmpiricalCalibration 3.1.4.

Empirical calibration of confidence intervalsUpdated 3 years ago

Martijn J. Schuemie, Marc A. Suchard

Rendered from EmpiricalCiCalibrationVignette.Rmd in EmpiricalCalibration 3.1.4.

Empirical calibration of p-valuesUpdated 3 years ago

Martijn J. Schuemie, Marc A. Suchard

Rendered from EmpiricalPCalibrationVignette.Rmd in EmpiricalCalibration 3.1.4.

Parallel execution using ParallelLoggerUpdated 5 years ago

Martijn J. Schuemie

Rendered from Parallel.Rmd in ParallelLogger 3.3.1.

Using AndromedaUpdated 5 years ago

Martijn J. Schuemie

Rendered from UsingAndromeda.Rmd in Andromeda 0.6.7.