R packages by ohdsi

LocalControl-jss-2020Updated 1 days ago

Christophe G. Lambert

Rendered from LocalControl-jss-2020.Rnw in LocalControl 1.1.4.

Summarise clinical tables recordsUpdated 9 days ago

Cecilia Campanile

Rendered from A-summarise_clinical_tables_records.Rmd in OmopSketch 0.1.1.

Summarise concept countsUpdated 9 days ago

Cecilia Campanile

Rendered from B-summarise_concept_counts.Rmd in OmopSketch 0.1.1.

Step 1. Generate a sequence cohortUpdated 14 days ago

Xihang Chen

Rendered from a02_Generate_a_sequence_cohort.Rmd in CohortSymmetry 0.1.4.

Applying cohort table requirementsUpdated 28 days ago

Edward Burn

Rendered from a02_cohort_table_requirements.Rmd in CohortConstructor 0.3.2.

Applying demographic requirements to a cohortUpdated 28 days ago

Edward Burn

Rendered from a03_require_demographics.Rmd in CohortConstructor 0.3.2.

Applying requirements related to other cohorts, concept sets, or tablesUpdated 28 days ago

Edward Burn

Rendered from a04_require_intersections.Rmd in CohortConstructor 0.3.2.

Concatenating cohort recordsUpdated 28 days ago

Edward Burn

Rendered from a06_concatanate_cohorts.Rmd in CohortConstructor 0.3.2.

Generating a matched cohortUpdated 28 days ago

Edward Burn

Rendered from a10_match_cohorts.Rmd in CohortConstructor 0.3.2.

Updating cohort start and end datesUpdated 30 days ago

Edward Burn

Rendered from a05_update_cohort_start_end.Rmd in CohortConstructor 0.3.2.

Filtering cohortsUpdated 30 days ago

Edward Burn

Rendered from a07_filter_cohorts.Rmd in CohortConstructor 0.3.2.

Splitting cohortsUpdated 30 days ago

Edward Burn

Rendered from a08_split_cohorts.Rmd in CohortConstructor 0.3.2.

Combining CohortsUpdated 30 days ago

Edward Burn

Rendered from a09_combine_cohorts.Rmd in CohortConstructor 0.3.2.

CohortConstructor benchmarking resultsUpdated 30 days ago

Edward Burn

Rendered from a11_benchmark.Rmd in CohortConstructor 0.3.2.

Building base cohortsUpdated 30 days ago

Edward Burn

Rendered from a01_building_base_cohorts.Rmd in CohortConstructor 0.3.2.

Introduction to CohortSymmetryUpdated 1 months ago

Xihang Chen

Rendered from a01_Introduction.Rmd in CohortSymmetry 0.1.4.

Step 2. Obtain the sequence ratiosUpdated 1 months ago

Xihang Chen

Rendered from a03_Summarise_sequence_ratios.Rmd in CohortSymmetry 0.1.4.

Plot and tables in OmopViewerUpdated 1 months ago

Martí Català

Rendered from supported_result_type.Rmd in OmopViewer 0.2.0.

Creating Cohort Subset DefinitionsUpdated 2 months ago

James P. Gilbert and Anthony G. Sena

Rendered from CreatingCohortSubsetDefinitions.Rmd in CohortGenerator 0.11.2.

Generating CohortsUpdated 2 months ago

Anthony G. Sena and Martijn J. Schuemie

Rendered from GeneratingCohorts.Rmd in CohortGenerator 0.11.2.

Sampling CohortsUpdated 2 months ago

James P. Gilbert

Rendered from SamplingCohorts.Rmd in CohortGenerator 0.11.2.

Using SqlRenderUpdated 2 months ago

Martijn J. Schuemie

Rendered from UsingSqlRender.Rmd in SqlRender 1.19.0.

Step 4: Obtain aggregated data on temporal symmetryUpdated 2 months ago

Xihang Chen

Rendered from a05_Summarise_temporal_symmetry.Rmd in CohortSymmetry 0.1.4.

Creating synthetic clinical tablesUpdated 3 months ago

Mike Du

Rendered from a01_Creating_synthetic_clinical_tables.Rmd in omock 0.3.1.9000.

Logging using ParallelLoggerUpdated 3 months ago

Martijn J. Schuemie

Rendered from Logging.Rmd in ParallelLogger 3.3.1.

Step 3. Visualise the sequence ratiosUpdated 3 months ago

Xihang Chen

Rendered from a04_Visualise_sequence_ratios.Rmd in CohortSymmetry 0.1.4.

Step 5: Visualise temporal symmetryUpdated 3 months ago

Xihang Chen

Rendered from a06_Visualise_temporal_symmetry.Rmd in CohortSymmetry 0.1.4.

Creating synthetic cohortsUpdated 4 months ago

Mike Du

Rendered from a02_Creating_synthetic_cohorts.Rmd in omock 0.3.1.9000.

Building a bespoke mock cdmUpdated 4 months ago

Mike Du

Rendered from a04_Building_a_bespoke_mock_cdm.Rmd in omock 0.3.1.9000.

Creating custom covariate buildersUpdated 4 months ago

Martijn J. Schuemie

Rendered from CreatingCustomCovariateBuilders.Rmd in FeatureExtraction 3.7.2.

IntroductionUpdated 6 months ago

Edward Burn

Rendered from a00_introduction.Rmd in CohortConstructor 0.3.2.

Using FeatureExtractionUpdated 7 months ago

Martijn J. Schuemie

Rendered from UsingFeatureExtraction.Rmd in FeatureExtraction 3.7.2.

Using FeatureExtraction (Korean)Updated 7 months ago

Jeon Ga Bin & Martijn J. Schuemie

Rendered from UsingFeatureExtractionKorean.Rmd in FeatureExtraction 3.7.2.

Creating covariates using cohort attributesUpdated 7 months ago

Martijn J. Schuemie

Rendered from CreatingCovariatesUsingCohortAttributes.Rmd in FeatureExtraction 3.7.2.

Creating custom covariate builders (Korean)Updated 7 months ago

Jeon Ga Bin & Martijn J. Schuemie

Rendered from CreatingCustomCovariateBuildersKorean.Rmd in FeatureExtraction 3.7.2.

Creating a synthetic vocabularyUpdated 9 months ago

Mike Du

Rendered from a03_Creating_a_synthetic_vocabulary.Rmd in omock 0.3.1.9000.

How to use Cohort ExplorerUpdated 1 years ago

Gowtham A. Rao

Rendered from HowToUseCohortExplorer.Rmd in CohortExplorer 0.1.0.

Creating MigrationsUpdated 1 years ago

James P. Gilbert

Rendered from CreatingMigrations.Rmd in ResultModelManager 0.5.11.

Package DesignUpdated 1 years ago

James P. Gilbert

Rendered from PackageDesign.Rmd in ResultModelManager 0.5.11.

Upload FunctionalityUpdated 1 years ago

James P. Gilbert

Rendered from UploadFunctionality.Rmd in ResultModelManager 0.5.11.

Using An Export ManagerUpdated 1 years ago

James P. Gilbert

Rendered from UsingAnExportManager.Rmd in ResultModelManager 0.5.11.

Using Query NamespacesUpdated 1 years ago

James P. Gilbert

Rendered from UsingQueryNamespaces.Rmd in ResultModelManager 0.5.11.

How to Use CohortAlgebra R PackageUpdated 1 years ago

Gowtham A. Rao

Rendered from HowToUseCohortAlgebraRPackage.Rmd in CohortAlgebra 0.3.0.

Connecting to a databaseUpdated 1 years ago

Martijn J. Schuemie

Rendered from Connecting.Rmd in DatabaseConnector 6.3.2.

Creating covariates based on other cohortsUpdated 1 years ago

Martijn J. Schuemie

Rendered from CreatingCovariatesBasedOnOtherCohorts.Rmd in FeatureExtraction 3.7.2.

Bayesian adaptive bias correction using profile likelihoodsUpdated 2 years ago

Fan Bu

Rendered from BayesianBiasCorrection.Rmd in EvidenceSynthesis 0.5.0.

Code used in the video vignetteUpdated 2 years ago

Martijn Schuemie

Rendered from VideoVignette.Rmd in EvidenceSynthesis 0.5.0.

Effect estimate synthesis using non-normal likelihood approximationsUpdated 2 years ago

Martijn J. Schuemie

Rendered from NonNormalEffectSynthesis.Rmd in EvidenceSynthesis 0.5.0.

Querying a databaseUpdated 2 years ago

Martijn J. Schuemie

Rendered from Querying.Rmd in DatabaseConnector 6.3.2.

Using DatabaseConnector through DBI and dbplyrUpdated 2 years ago

Martijn J. Schuemie

Rendered from DbiAndDbplyr.Rmd in DatabaseConnector 6.3.2.

Using Connection HandlersUpdated 2 years ago

James P. Gilbert

Rendered from UsingConnectionHandlers.Rmd in ResultModelManager 0.5.11.

Empirical calibration and MaxSPRTUpdated 2 years ago

Martijn J. Schuemie

Rendered from EmpiricalMaxSprtCalibrationVignette.Rmd in EmpiricalCalibration 3.1.3.

Empirical calibration of confidence intervalsUpdated 3 years ago

Martijn J. Schuemie, Marc A. Suchard

Rendered from EmpiricalCiCalibrationVignette.Rmd in EmpiricalCalibration 3.1.3.

Empirical calibration of p-valuesUpdated 3 years ago

Martijn J. Schuemie, Marc A. Suchard

Rendered from EmpiricalPCalibrationVignette.Rmd in EmpiricalCalibration 3.1.3.

Parallel execution using ParallelLoggerUpdated 4 years ago

Martijn J. Schuemie

Rendered from Parallel.Rmd in ParallelLogger 3.3.1.

Using AndromedaUpdated 5 years ago

Martijn J. Schuemie

Rendered from UsingAndromeda.Rmd in Andromeda 0.6.7.