Package: CirceR 1.3.3

Chris Knoll

CirceR: Construct Cohort Inclusion and Restriction Criteria Expressions

Wraps the 'CIRCE' (<https://github.com/ohdsi/circe-be>) 'Java' library allowing cohort definition expressions to be edited and converted to 'Markdown' or 'SQL'.

Authors:Chris Knoll [aut, cre], Martijn Schuemie [aut]

CirceR_1.3.3.tar.gz
CirceR_1.3.3.zip(r-4.5)CirceR_1.3.3.zip(r-4.4)CirceR_1.3.3.zip(r-4.3)
CirceR_1.3.3.tgz(r-4.4-any)CirceR_1.3.3.tgz(r-4.3-any)
CirceR_1.3.3.tar.gz(r-4.5-noble)CirceR_1.3.3.tar.gz(r-4.4-noble)
CirceR_1.3.3.tgz(r-4.4-emscripten)CirceR_1.3.3.tgz(r-4.3-emscripten)
CirceR.pdf |CirceR.html✨
CirceR/json (API)
NEWS

# Install 'CirceR' in R:

install.packages('CirceR', repos = c('https://ohdsi.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ohdsi/circer/issues

Uses libs:

openjdk– OpenJDK Java runtime, using Hotspot JIT

Datasets:

cohortDefinitionJson - An example cohort definition
conceptSetJson - An example concept set
conceptSetListJson - An example concept set list

On CRAN:

hades

4.72 score 6 stars 58 scripts 727 downloads 8 exports 2 dependencies

Last updated 7 months agofrom:30303ec28b. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 21 2024
R-4.5-win	OK	Nov 21 2024
R-4.5-linux	OK	Nov 21 2024
R-4.4-win	OK	Nov 21 2024
R-4.4-mac	OK	Nov 21 2024
R-4.3-win	OK	Nov 21 2024
R-4.3-mac	OK	Nov 21 2024

Exports:buildCohortQuery buildConceptSetQuery cohortExpressionFromJson cohortPrintFriendly conceptSetExpressionFromJson conceptSetListPrintFriendly conceptSetPrintFriendly createGenerateOptions

Dependencies:rJava RJSONIO

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Build cohort SQL	buildCohortQuery
Build conceptset SQL	buildConceptSetQuery
An example cohort definition	cohortDefinitionJson
Render read JSON into a CohortExpression instance	cohortExpressionFromJson
Render cohort print-friendly	cohortPrintFriendly
Render read JSON into a ConceptSetExpression instance	conceptSetExpressionFromJson
An example concept set	conceptSetJson
An example concept set list	conceptSetListJson
Render conceptSet array for print-friendly	conceptSetListPrintFriendly
Render conceptSet array for print-friendly	conceptSetPrintFriendly
Create Generation Options	createGenerateOptions