Package: CirceR 1.3.3

Chris Knoll

CirceR: Construct Cohort Inclusion and Restriction Criteria Expressions

Wraps the 'CIRCE' (<https://github.com/ohdsi/circe-be>) 'Java' library allowing cohort definition expressions to be edited and converted to 'Markdown' or 'SQL'.

Authors:Chris Knoll [aut, cre], Martijn Schuemie [aut]

CirceR_1.3.3.tar.gz
CirceR_1.3.3.zip(r-4.7)CirceR_1.3.3.zip(r-4.6)CirceR_1.3.3.zip(r-4.5)
CirceR_1.3.3.tgz(r-4.6-any)CirceR_1.3.3.tgz(r-4.5-any)
CirceR_1.3.3.tar.gz(r-4.7-any)CirceR_1.3.3.tar.gz(r-4.6-any)
CirceR_1.3.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
CirceR/json (API)

# Install 'CirceR' in R:

install.packages('CirceR', repos = c('https://ohdsi.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ohdsi/circer/issues

Pkgdown/docs site:https://ohdsi.github.io

Uses libs:

openjdk– OpenJDK Java runtime, using Hotspot JIT

Datasets:

cohortDefinitionJson - An example cohort definition
conceptSetJson - An example concept set
conceptSetListJson - An example concept set list

On CRAN:

hades openjdk

5.09 score 6 stars 1 packages 136 scripts 748 downloads 8 exports 2 dependencies

Last updated from:30303ec28b. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	162
source / vignettes	OK	192
linux-release-x86_64	OK	132
macos-release-arm64	OK	101
macos-oldrel-arm64	OK	110
windows-devel	OK	70
windows-release	OK	75
windows-oldrel	OK	83
wasm-release	OK	108

Exports:buildCohortQuery buildConceptSetQuery cohortExpressionFromJson cohortPrintFriendly conceptSetExpressionFromJson conceptSetListPrintFriendly conceptSetPrintFriendly createGenerateOptions

Dependencies:rJava RJSONIO

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Build cohort SQL	buildCohortQuery
Build conceptset SQL	buildConceptSetQuery
An example cohort definition	cohortDefinitionJson
Render read JSON into a CohortExpression instance	cohortExpressionFromJson
Render cohort print-friendly	cohortPrintFriendly
Render read JSON into a ConceptSetExpression instance	conceptSetExpressionFromJson
An example concept set	conceptSetJson
An example concept set list	conceptSetListJson
Render conceptSet array for print-friendly	conceptSetListPrintFriendly
Render conceptSet array for print-friendly	conceptSetPrintFriendly
Create Generation Options	createGenerateOptions