Package: PhenotypeR 0.1.0

Edward Burn

PhenotypeR: Assess Study Cohorts Using a Common Data Model

Phenotype study cohorts in data mapped to the Observational Medical Outcomes Partnership Common Data Model. Diagnostics are run at the database, code list, cohort, and population level to assess whether study cohorts are ready for research.

Authors:Edward Burn [aut, cre], Marti Catala [aut], Xihang Chen [aut], Marta Alcalde-Herraiz [aut], Albert Prats-Uribe [aut]

PhenotypeR_0.1.0.tar.gz
PhenotypeR_0.1.0.zip(r-4.5)PhenotypeR_0.1.0.zip(r-4.4)PhenotypeR_0.1.0.zip(r-4.3)
PhenotypeR_0.1.0.tgz(r-4.4-any)PhenotypeR_0.1.0.tgz(r-4.3-any)
PhenotypeR_0.1.0.tar.gz(r-4.5-noble)PhenotypeR_0.1.0.tar.gz(r-4.4-noble)
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PhenotypeR.pdf |PhenotypeR.html✨
PhenotypeR/json (API)

# Install 'PhenotypeR' in R:
install.packages('PhenotypeR', repos = c('https://ohdsi.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ohdsi/phenotyper/issues

Pkgdown site:https://ohdsi.github.io

On CRAN:

6.26 score 1 stars 16 scripts 129 downloads 19 exports 129 dependencies

Last updated 12 days agofrom:f030438f17. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 14 2024
R-4.5-winOKDec 14 2024
R-4.5-linuxOKDec 14 2024
R-4.4-winOKDec 14 2024
R-4.4-macOKDec 14 2024
R-4.3-winOKDec 14 2024
R-4.3-macOKDec 14 2024

Exports:%>%addCodelistAttributebindcodelistDiagnosticscohortDiagnosticsdatabaseDiagnosticsexportSummarisedResultimportSummarisedResultmatchedDiagnosticsmockPhenotypeRphenotypeDiagnosticspopulationDiagnosticssettingsshinyDiagnosticssummariseAchillesCodeUsesummariseCodeUsesummariseCohortCodeUsesummariseOrphanCodessuppress

Dependencies:askpassbackportsbase64encbigDbitbit64bitopsblobbslibcachemCDMConnectorcheckmateclicliprclockCodelistGeneratorCohortCharacteristicsCohortConstructorcolorspacecommonmarkcpp11crayoncredentialscurldata.tableDBIdbplyrdescdiffobjdigestdplyrduckdbevaluatefansifarverfastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverfsgdtoolsgenericsgertggplot2ghgitcredsgluegtgtablehighrhmshtmltoolshtmlwidgetshttr2IncidencePrevalenceiniisobandjquerylibjsonlitejuicyjuiceknitrlabelinglatticelifecyclelubridatemagrittrmarkdownMASSMatrixmemoisemgcvmimemunsellnlmeofficeromockomopgenericsOmopSketchopensslPatientProfilespillarpkgconfigprettyunitsprogresspurrrR6raggrappdirsRColorBrewerRcppreactablereactRreadrRJSONIOrlangrmarkdownrprojrootrstudioapisassscalessnakecasestringistringrsyssystemfontstextshapingtibbletidyrtidyselecttimechangetinytextzdbusethisutf8uuidV8vctrsviridisLitevisOmopResultsvroomwaldowhiskerwithrxfunxml2yamlzip

Database diagnostics

Rendered froma01_DatabaseDiagnostics.Rmdusingknitr::rmarkdownon Dec 14 2024.

Last update: 2024-10-01
Started: 2024-10-01

Codelist diagnostics

Rendered froma02_CodelistDiagnostics.Rmdusingknitr::rmarkdownon Dec 14 2024.

Last update: 2024-10-18
Started: 2024-06-25

Cohort diagnostics

Rendered froma03_CohortDiagnostics.Rmdusingknitr::rmarkdownon Dec 14 2024.

Last update: 2024-10-18
Started: 2024-06-25

a04_MatchedDiagnostics

Rendered froma04_MatchedDiagnostics.Rmdusingknitr::rmarkdownon Dec 14 2024.

Last update: 2024-10-18
Started: 2024-10-03

a05_PopulationDiagnostics

Rendered froma05_PopulationDiagnostics.Rmdusingknitr::rmarkdownon Dec 14 2024.

Last update: 2024-10-18
Started: 2024-10-14