Package: PhenotypeR 0.5.0

Edward Burn

PhenotypeR: Assess Study Cohorts Using a Common Data Model

Phenotype study cohorts in data mapped to the Observational Medical Outcomes Partnership Common Data Model. Diagnostics are run at the database, code list, cohort, and population level to assess whether study cohorts are ready for research.

Authors:Edward Burn [aut, cre], Martí Català [aut], Xihang Chen [aut], Marta Alcalde-Herraiz [aut], Nuria Mercade-Besora [aut], Albert Prats-Uribe [aut]

PhenotypeR_0.5.0.tar.gz
PhenotypeR_0.5.0.zip(r-4.7)PhenotypeR_0.5.0.zip(r-4.6)PhenotypeR_0.5.0.zip(r-4.5)
PhenotypeR_0.5.0.tgz(r-4.6-any)PhenotypeR_0.5.0.tgz(r-4.5-any)
PhenotypeR_0.5.0.tar.gz(r-4.7-any)PhenotypeR_0.5.0.tar.gz(r-4.6-any)
PhenotypeR_0.5.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PhenotypeR/json (API)

# Install 'PhenotypeR' in R:
install.packages('PhenotypeR', repos = c('https://ohdsi.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ohdsi/phenotyper/issues

Pkgdown/docs site:https://ohdsi.github.io

On CRAN:

Conda:

8.12 score 7 stars 52 scripts 996 downloads 27 exports 54 dependencies

Last updated from:a2835f0499. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK161
source / vignettesOK233
linux-release-x86_64OK182
macos-release-arm64OK91
macos-oldrel-arm64OK99
windows-develOK129
windows-releaseOK109
windows-oldrelOK113
wasm-releaseOK138

Exports:addCodelistAttributebindclinicalDescriptionSpecificationcodelistDiagnosticscohortDiagnosticsdatabaseDiagnosticsdataSourceDescriptionSpecificationdownloadClinicalDescriptionTemplatedownloadDatabaseDescriptionTemplatedraftClinicalDescriptionexportSummarisedResultgetCohortExpectationsimportClinicalDescriptionimportDatabaseDescriptionimportSummarisedResultphenotypeDiagnosticspopulationDiagnosticssettingsshinyClinicalDescriptionsshinyDataSourceDescriptionsshinyDiagnosticssummariseAchillesCodeUsesummariseCodeUsesummariseCohortCodeUsesummariseOrphanCodessuppresstableCohortExpectations

Dependencies:askpassbackportsbitbit64blobCDMConnectorcheckmateclicliprclockCodelistGeneratorCohortCharacteristicsCohortConstructorcpp11crayoncurlDBIdbplyrdplyrDrugUtilisationgenericsgluehmshttrIncidencePrevalencejsonlitelifecyclemagrittrMeasurementDiagnosticsmimeomopgenericsOmopSketchopensslPatientProfilespillarpkgconfigprettyunitsprogresspurrrR6readrrlangsnakecasestringistringrsystibbletidyrtidyselecttzdbutf8vctrsvroomwithr

CreateDescriptions

Rendered fromCreateDescriptions.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2026-04-16
Started: 2026-04-16

Phenotype diagnostics

Rendered fromPhenotypeDiagnostics.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2026-05-21
Started: 2025-07-23

Phenotype expectations

Rendered fromPhenotypeExpectations.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2026-04-14
Started: 2025-07-24

Shiny diagnostics

Rendered fromShinyDiagnostics.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2026-04-16
Started: 2025-07-23