Package: PhenotypeR 0.1.1.900

Edward Burn

PhenotypeR: Assess Study Cohorts Using a Common Data Model

Phenotype study cohorts in data mapped to the Observational Medical Outcomes Partnership Common Data Model. Diagnostics are run at the database, code list, cohort, and population level to assess whether study cohorts are ready for research.

Authors:Edward Burn [aut, cre], Marti Catala [aut], Xihang Chen [aut], Marta Alcalde-Herraiz [aut], Albert Prats-Uribe [aut]

PhenotypeR_0.1.1.900.tar.gz
PhenotypeR_0.1.1.900.zip(r-4.5)PhenotypeR_0.1.1.900.zip(r-4.4)PhenotypeR_0.1.1.900.zip(r-4.3)
PhenotypeR_0.1.1.900.tgz(r-4.5-any)PhenotypeR_0.1.1.900.tgz(r-4.4-any)PhenotypeR_0.1.1.900.tgz(r-4.3-any)
PhenotypeR_0.1.1.900.tar.gz(r-4.5-noble)PhenotypeR_0.1.1.900.tar.gz(r-4.4-noble)
PhenotypeR_0.1.1.900.tgz(r-4.4-emscripten)PhenotypeR_0.1.1.900.tgz(r-4.3-emscripten)
PhenotypeR.pdf |PhenotypeR.html✨
PhenotypeR/json (API)

# Install 'PhenotypeR' in R:
install.packages('PhenotypeR', repos = c('https://ohdsi.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ohdsi/phenotyper/issues

Pkgdown site:https://ohdsi.github.io

On CRAN:

7.16 score 2 stars 54 scripts 361 downloads 19 exports 51 dependencies

Last updated 5 hours agofrom:59b8bb855c. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 01 2025
R-4.5-winOKFeb 01 2025
R-4.5-macOKFeb 01 2025
R-4.5-linuxOKFeb 01 2025
R-4.4-winOKFeb 01 2025
R-4.4-macOKFeb 01 2025
R-4.3-winOKFeb 01 2025
R-4.3-macOKFeb 01 2025

Exports:%>%addCodelistAttributebindcodelistDiagnosticscohortDiagnosticsdatabaseDiagnosticsexportSummarisedResultimportSummarisedResultmatchedDiagnosticsmockPhenotypeRphenotypeDiagnosticspopulationDiagnosticssettingsshinyDiagnosticssummariseAchillesCodeUsesummariseCodeUsesummariseCohortCodeUsesummariseOrphanCodessuppress

Dependencies:backportsbitbit64blobCDMConnectorcheckmateclicliprclockCodelistGeneratorCohortCharacteristicsCohortConstructorcpp11crayonDBIdbplyrdplyrfansigenericsgluehmsIncidencePrevalencejsonlitelifecyclelubridatemagrittromopgenericsOmopSketchPatientProfilespillarpkgconfigprettyunitsprogresspurrrR6readrRJSONIOrlangsnakecasestringistringrtibbletidyrtidyselecttimechangetzdbutf8vctrsvisOmopResultsvroomwithr

Database diagnostics

Rendered froma01_DatabaseDiagnostics.Rmdusingknitr::rmarkdownon Feb 01 2025.

Last update: 2024-10-01
Started: 2024-10-01

Codelist diagnostics

Rendered froma02_CodelistDiagnostics.Rmdusingknitr::rmarkdownon Feb 01 2025.

Last update: 2025-01-17
Started: 2024-06-25

Cohort diagnostics

Rendered froma03_CohortDiagnostics.Rmdusingknitr::rmarkdownon Feb 01 2025.

Last update: 2025-01-17
Started: 2024-06-25

a04_MatchedDiagnostics

Rendered froma04_MatchedDiagnostics.Rmdusingknitr::rmarkdownon Feb 01 2025.

Last update: 2024-10-18
Started: 2024-10-03

PopulationDiagnostics

Rendered froma05_PopulationDiagnostics.Rmdusingknitr::rmarkdownon Feb 01 2025.

Last update: 2025-01-21
Started: 2024-10-14