Package: OmopSketch 1.0.1.900

Cecilia Campanile

OmopSketch: Characterise Tables of an OMOP Common Data Model Instance

Summarises key information in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Assess suitability to perform specific epidemiological studies and explore the different domains to obtain feasibility counts and trends.

Authors:Marta Alcalde-Herraiz [aut], Kim Lopez-Guell [aut], Elin Rowlands [aut], Cecilia Campanile [aut, cre], Edward Burn [aut], Martí Català [aut]

OmopSketch_1.0.1.900.tar.gz
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OmopSketch_1.0.1.900.tgz(r-4.6-any)OmopSketch_1.0.1.900.tgz(r-4.5-any)
OmopSketch_1.0.1.900.tar.gz(r-4.7-any)OmopSketch_1.0.1.900.tar.gz(r-4.6-any)
OmopSketch_1.0.1.900.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
OmopSketch/json (API)
NEWS

# Install 'OmopSketch' in R:
install.packages('OmopSketch', repos = c('https://ohdsi.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ohdsi/omopsketch/issues

Pkgdown/docs site:https://ohdsi.github.io

On CRAN:

Conda:

8.17 score 4 stars 1 packages 141 scripts 750 downloads 36 exports 31 dependencies

Last updated from:527569b972. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE356
source / vignettesOK233
linux-release-x86_64NOTE345
macos-release-arm64NOTE193
macos-oldrel-arm64NOTE213
windows-develNOTE260
windows-releaseNOTE214
windows-oldrelNOTE272
wasm-releaseOK172

Exports:bindclinicalTablesdatabaseCharacteristicsexportSummarisedResultimportSummarisedResultmockOmopSketchplotConceptSetCountsplotInObservationplotObservationPeriodplotPersonplotRecordCountplotTrendsettingsshinyCharacteristicssummariseClinicalRecordssummariseConceptCountssummariseConceptIdCountssummariseConceptSetCountssummariseInObservationsummariseMissingDatasummariseObservationPeriodsummariseOmopSnapshotsummarisePersonsummariseRecordCountsummariseTrendsuppresstableClinicalRecordstableConceptIdCountstableInObservationtableMissingDatatableObservationPeriodtableOmopSnapshottablePersontableRecordCounttableTopConceptCountstableTrend

Dependencies:blobcliclockCodelistGeneratorCohortConstructorcpp11DBIdbplyrdplyrgenericsgluejsonlitelifecyclemagrittromopgenericsPatientProfilespillarpkgconfigpurrrR6rlangsnakecasestringistringrtibbletidyrtidyselecttzdbutf8vctrswithr

Summarise database characteristics

Rendered fromdatabase_characteristics.Rmdusingknitr::rmarkdownon Jun 04 2026.

Last update: 2025-11-11
Started: 2025-06-18

Readme and manuals

Help Manual

Help pageTopics
Tables in the cdm_reference that contain clinical informationclinicalTables
Summarise Database Characteristics for OMOP CDMdatabaseCharacteristics
Creates a mock database to test OmopSketch packagemockOmopSketch
Plot the concept counts of a summariseConceptSetCounts outputplotConceptSetCounts
Create a ggplot2 plot from the output of summariseInObservation()plotInObservation
Create a plot from the output of summariseObservationPeriod()plotObservationPeriod
Visualise the output of 'summarisePerson()'plotPerson
Create a ggplot of the records' count trendplotRecordCount
Create a ggplot2 plot from the output of summariseTrend()plotTrend
Generate an interactive Shiny application that visualises the results obtained from the 'databaseCharacteristics()' functionshinyCharacteristics
Summarise an omop table from a cdm objectsummariseClinicalRecords
Summarise concept counts in patient-level datasummariseConceptCounts
Summarise concept use in patient-level datasummariseConceptIdCounts
Summarise concept counts in patient-level datasummariseConceptSetCounts
Summarise the number of people in observation during a specific interval of timesummariseInObservation
Summarise missing data in omop tablessummariseMissingData
Summarise the observation period table getting some overall statistics in a summarised_result objectsummariseObservationPeriod
Summarise a cdm_reference object creating a snapshot with the metadata of the cdm_reference objectsummariseOmopSnapshot
Summarise person tablesummarisePerson
Summarise record counts of an omop_table using a specific time intervalsummariseRecordCount
Summarise temporal trends in OMOP tablessummariseTrend
Create a visual table from a summariseClinicalRecord() outputtableClinicalRecords
Create a visual table from a summariseConceptIdCounts() resulttableConceptIdCounts
Create a visual table from a summariseInObservation() resulttableInObservation
Create a visual table from a summariseMissingData() resulttableMissingData
Create a visual table from a summariseObservationPeriod() resulttableObservationPeriod
Create a visual table from a summarise_omop_snapshot resulttableOmopSnapshot
Visualise the results of 'summarisePerson()' into a tabletablePerson
Create a visual table from a summariseRecordCount() resulttableRecordCount
Create a visual table of the most common concepts from 'summariseConceptIdCounts()' outputtableTopConceptCounts
Create a visual table from a summariseTrend() resulttableTrend