Package: DataQualityDashboard 2.8.9

Katy Sadowski

DataQualityDashboard: Execute and View Data Quality Checks on OMOP CDM Database

Assesses data quality in Observational Medical Outcomes Partnership Common Data Model (OMOP CDM) databases. Executes data quality checks and provides an R 'shiny' application to view the results.

Authors:Katy Sadowski [aut, cre], Clair Blacketer [aut], Maxim Moinat [aut], Ajit Londhe [aut], Anthony Sena [aut], Anthony Molinaro [aut], Frank DeFalco [aut], Pavel Grafkin [aut]

DataQualityDashboard_2.8.9.tar.gz
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DataQualityDashboard_2.8.9.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
DataQualityDashboard/json (API)

# Install 'DataQualityDashboard' in R:
install.packages('DataQualityDashboard', repos = c('https://ohdsi.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ohdsi/dataqualitydashboard/issues

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT

On CRAN:

Conda:

data-qualityopenjdk

10.03 score 179 stars 66 scripts 730 downloads 8 exports 49 dependencies

Last updated from:608b690b6c. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK307
source / vignettesOK236
linux-release-x86_64OK432
macos-release-arm64OK198
macos-oldrel-arm64OK255
windows-develOK282
windows-releaseOK292
windows-oldrelOK273
wasm-releaseOK174

Exports:convertJsonResultsFileCaseexecuteDqCheckslistDqChecksreEvaluateThresholdsviewDqDashboardwriteDBResultsToJsonwriteJsonResultsToCsvwriteJsonResultsToTable

Dependencies:backportsbitbit64blobcheckmateclicliprcpp11crayonDatabaseConnectorDBIdbplyrdigestdplyrgenericsgluehmsjsonlitelifecyclemagrittrmemuseParallelLoggerpillarpkgconfigplyrprettyunitsprogresspurrrR6RcppreadrrJavarlangrstudioapisnowSqlRenderstringistringrtibbletidyrtidyselecttriebeardtzdburltoolsutf8vctrsvroomwithrxml2

Getting Started
R Installation | Note | Executing Data Quality Checks | Viewing Results | View checks
Rendered fromDataQualityDashboard.rmdusingknitr::knitr

Last update: 2026-03-23
Started: 2020-04-27

Add a New Data Quality Check
Add a New Check to Data Quality Dashboard | Steps | Write the SQL Query for Your Check | Format the Query for the Data Quality Dashboard | Add the Query to Check Descriptions File | Add Hooks to Field/Table/Concept Check CSV File
Rendered fromAddNewCheck.rmdusingknitr::knitr

Last update: 2026-01-09
Started: 2022-10-14

Check Status Definitions
Introduction | Not Applicable
Rendered fromCheckStatusDefinitions.rmdusingknitr::knitr

Last update: 2025-08-28
Started: 2022-10-14

Failure Thresholds and How to Change Them
DQD Failure Thresholds | DQD Control Files | Step 1: Find and copy the control files | Step 2: Turn On/Off Checks and Change Thresholds | Step 2a: Documenting Metadata on Updated Thresholds | Step 3: Run the DQD Using the Updated Thresholds
Rendered fromThresholds.rmdusingknitr::knitr

Last update: 2025-08-28
Started: 2020-05-15

Running the DQD in SqlOnly mode
Description | Generating the "Incremental Insert" DQD SQL | (OPTIONAL) Execute queries
Rendered fromSqlOnly.rmdusingknitr::knitr

Last update: 2025-08-28
Started: 2023-05-21

Running the DQD on a Cohort
Rendered fromDqdForCohorts.rmdusingknitr::knitr

Last update: 2025-08-28
Started: 2020-08-07

Readme and manuals

Help Manual

Help pageTopics
Convert JSON results file caseconvertJsonResultsFileCase
Execute DQ checksexecuteDqChecks
List DQ checkslistDqChecks
Re-evaluate ThresholdsreEvaluateThresholds
View DQ DashboardviewDqDashboard
Write DQD results database table to jsonwriteDBResultsToJson
Write JSON Results to CSV filewriteJsonResultsToCsv
Write JSON Results to SQL TablewriteJsonResultsToTable