Package: CohortSymmetry 0.2.0
Xihang Chen
CohortSymmetry: Sequence Symmetry Analysis Using the Observational Medical Outcomes Partnership Common Data Model
Calculating crude sequence ratio, adjusted sequence ratio and confidence intervals using data mapped to the Observational Medical Outcomes Partnership Common Data Model.
Authors:
CohortSymmetry_0.2.0.tar.gz
CohortSymmetry_0.2.0.zip(r-4.5)CohortSymmetry_0.2.0.zip(r-4.4)CohortSymmetry_0.2.0.zip(r-4.3)
CohortSymmetry_0.2.0.tgz(r-4.5-any)CohortSymmetry_0.2.0.tgz(r-4.4-any)CohortSymmetry_0.2.0.tgz(r-4.3-any)
CohortSymmetry_0.2.0.tar.gz(r-4.5-noble)CohortSymmetry_0.2.0.tar.gz(r-4.4-noble)
CohortSymmetry_0.2.0.tgz(r-4.4-emscripten)CohortSymmetry_0.2.0.tgz(r-4.3-emscripten)
CohortSymmetry.pdf |CohortSymmetry.html✨
CohortSymmetry/json (API)
| # Install 'CohortSymmetry' in R: |
| install.packages('CohortSymmetry', repos = c('https://ohdsi.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ohdsi/cohortsymmetry/issues
Pkgdown site:https://ohdsi.github.io
Last updated 2 months agofrom:704b5745fd. Checks:5 OK, 3 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Jan 28 2025 |
| R-4.5-win | NOTE | Jan 28 2025 |
| R-4.5-mac | NOTE | Jan 28 2025 |
| R-4.5-linux | NOTE | Jan 28 2025 |
| R-4.4-win | OK | Jan 28 2025 |
| R-4.4-mac | OK | Jan 28 2025 |
| R-4.3-win | OK | Jan 28 2025 |
| R-4.3-mac | OK | Jan 28 2025 |
Exports:generateSequenceCohortSetmockCohortSymmetryplotSequenceRatiosplotTemporalSymmetrysummariseSequenceRatiossummariseTemporalSymmetrytableSequenceRatiostableTemporalSymmetry
Dependencies:backportsbitbit64blobCDMConnectorcheckmateclicliprclockCodelistGeneratorcpp11crayonDBIdbplyrdplyrDrugUtilisationduckdbfansigenericsglueherehmsjsonlitelifecyclelubridatemagrittromockomopgenericsPatientProfilespillarpkgconfigprettyunitsprogresspurrrR6readrRJSONIOrlangrprojrootsnakecasestringistringrtibbletidyrtidyselecttimechangetzdbutf8vctrsvisOmopResultsvroomwithr
Introduction to CohortSymmetry
Rendered froma01_Introduction.Rmdusingknitr::rmarkdownon Jan 28 2025.Last update: 2024-11-29
Started: 2024-04-22
Step 1. Generate a sequence cohort
Rendered froma02_Generate_a_sequence_cohort.Rmdusingknitr::rmarkdownon Jan 28 2025.Last update: 2024-11-08
Started: 2024-10-15
Step 2. Obtain the sequence ratios
Rendered froma03_Summarise_sequence_ratios.Rmdusingknitr::rmarkdownon Jan 28 2025.Last update: 2024-11-29
Started: 2024-05-28
Step 3. Visualise the sequence ratios
Rendered froma04_Visualise_sequence_ratios.Rmdusingknitr::rmarkdownon Jan 28 2025.Last update: 2024-11-29
Started: 2024-05-28
Step 4: Obtain aggregated data on temporal symmetry
Rendered froma05_Summarise_temporal_symmetry.Rmdusingknitr::rmarkdownon Jan 28 2025.Last update: 2024-11-29
Started: 2024-05-28
Step 5: Visualise temporal symmetry
Rendered froma06_Visualise_temporal_symmetry.Rmdusingknitr::rmarkdownon Jan 28 2025.Last update: 2024-11-29
Started: 2024-05-28
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Intersecting the index and marker cohorts prior to calculating Sequence Symmetry Ratios | generateSequenceCohortSet |
| Creates mock cdm object for testing | mockCohortSymmetry |
| A plot for the sequence ratios. | plotSequenceRatios |
| A plot for the temporal symmetry of cohorts. | plotTemporalSymmetry |
| Sequence ratio calculations | summariseSequenceRatios |
| Summarise temporal symmetry | summariseTemporalSymmetry |
| A formatted visualization of sequence_symmetry objects. | tableSequenceRatios |
| A formatted visualization of temporal_symmetry objects. | tableTemporalSymmetry |
