{
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  "Package": "CohortGenerator",
  "Type": "Package",
  "Title": "Cohort Generation for the OMOP Common Data Model",
  "Version": "1.1.0",
  "Date": "2026-03-02",
  "Authors@R": "c(\nperson(\"Anthony\", \"Sena\", email = \"sena@ohdsi.org\", role = c(\"aut\", \"cre\")),\nperson(\"Jamie\", \"Gilbert\", role = c(\"aut\")),\nperson(\"Gowtham\", \"Rao\", email = \"gowthamrao@gmail.com\", role = c(\"aut\")),\nperson(\"Freddy\", \"Avila Cruz\", role = c(\"aut\")),\nperson(\"Martijn\", \"Schuemie\", email = \"schuemie@ohdsi.org\", role = c(\"aut\")),\nperson(\"Observational Health Data Science and Informatics\", role = c(\"cph\"))\n)",
  "Maintainer": "Anthony Sena <sena@ohdsi.org>",
  "Description": "Generate cohorts and subsets using an Observational\nMedical Outcomes Partnership (OMOP) Common Data Model (CDM)\nDatabase. Cohorts are defined using 'CIRCE'\n(<https://github.com/ohdsi/circe-be>) or SQL compatible with\n'SqlRender' (<https://github.com/OHDSI/SqlRender>).",
  "License": "Apache License",
  "VignetteBuilder": "knitr",
  "URL": "https://ohdsi.github.io/CohortGenerator/,\nhttps://github.com/OHDSI/CohortGenerator",
  "BugReports": "https://github.com/OHDSI/CohortGenerator/issues",
  "RoxygenNote": "7.3.3",
  "Encoding": "UTF-8",
  "Language": "en-US",
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  "Config/pak/sysreqs": "make default-jdk libicu-dev libxml2-dev libx11-dev",
  "Repository": "https://ohdsi.r-universe.dev",
  "Date/Publication": "2026-03-02 20:24:17 UTC",
  "RemoteUrl": "https://github.com/ohdsi/cohortgenerator",
  "RemoteRef": "HEAD",
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  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-24 07:25:51 UTC",
    "User": "root"
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  "Author": "Anthony Sena [aut, cre],\nJamie Gilbert [aut],\nGowtham Rao [aut],\nFreddy Avila Cruz [aut],\nMartijn Schuemie [aut],\nObservational Health Data Science and Informatics [cph]",
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  "_created": "2026-05-24T07:25:51.000Z",
  "_published": "2026-05-24T07:34:34.939Z",
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  "_buildurl": "https://github.com/r-universe/ohdsi/actions/runs/26355034336",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/ohdsi/cohortgenerator",
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    "hades",
    "openjdk"
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  "_contributors": [
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    "name": "Observational Health Data Sciences and Informatics"
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  "_downloads": {
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/CohortGenerator"
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  "_devurl": "https://github.com/ohdsi/cohortgenerator",
  "_pkgdown": "https://ohdsi.github.io/CohortGenerator/",
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  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/CohortGenerator.html",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/ohdsi/cohortgenerator",
  "_realowner": "ohdsi",
  "_cranurl": true,
  "_releases": [
    {
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      "date": "2024-09-15"
    },
    {
      "version": "0.11.2",
      "date": "2024-09-30"
    },
    {
      "version": "0.12.0",
      "date": "2025-08-01"
    },
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    },
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    },
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      "date": "2026-02-16"
    },
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      "version": "1.1.0",
      "date": "2026-03-03"
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  ],
  "_exports": [
    "addCohortSubsetDefinition",
    "addCohortTemplateDefintion",
    "addExcludeOnIndexSubsetDefinition",
    "addIndicationSubsetDefinition",
    "addRestrictionSubsetDefinition",
    "addSqlCohortDefinition",
    "addUnionCohortDefinition",
    "checkAndFixCohortDefinitionSetDataTypes",
    "CohortSubsetDefinition",
    "CohortSubsetOperator",
    "CohortTemplateDefinition",
    "computeChecksum",
    "computeCohortAttrition",
    "createAtcCohortTemplateDefinition",
    "createCohortSubset",
    "createCohortSubsetDefinition",
    "createCohortSubsetOperator",
    "createCohortTables",
    "createCohortTemplateDefintion",
    "createDemographicSubset",
    "createDemographicSubsetOperator",
    "createEmptyCohortDefinitionSet",
    "createEmptyNegativeControlOutcomeCohortSet",
    "createLimitSubset",
    "createLimitSubsetOperator",
    "createResultsDataModel",
    "createRxNormCohortTemplateDefinition",
    "createSnomedCohortTemplateDefinition",
    "createSubsetCohortWindow",
    "createUnionCohortTemplate",
    "DemographicSubsetOperator",
    "dropCohortStatsTables",
    "exportCohortStatsTables",
    "exportCohortSubsetStatsTables",
    "generateCohortSet",
    "generateNegativeControlOutcomeCohorts",
    "getCohortCounts",
    "getCohortDefinitionSet",
    "getCohortInclusionRules",
    "getCohortStats",
    "getCohortTableNames",
    "getCohortValidationCounts",
    "getDataMigrator",
    "getExcludeOnIndexSubsetDefinitionIds",
    "getIndicationSubsetDefinitionIds",
    "getLastGeneratedCohortChecksums",
    "getRestrictionSubsetDefinitionIds",
    "getResultsDataModelSpecifications",
    "getSubsetDefinitions",
    "getTemplateDefinitions",
    "insertInclusionRuleNames",
    "isCamelCase",
    "isCohortDefinitionSet",
    "isFormattedForDatabaseUpload",
    "isSnakeCase",
    "LimitSubsetOperator",
    "migrateDataModel",
    "readCsv",
    "runCohortGeneration",
    "sampleCohortDefinitionSet",
    "saveCohortDefinitionSet",
    "saveCohortSubsetDefinition",
    "SubsetCohortWindow",
    "SubsetOperator",
    "uploadResults",
    "writeCsv"
  ],
  "_datasets": [
    {
      "name": "omopCdmDrugExposure",
      "title": "OMOP CDM Drug Exposure Sample Data",
      "object": "omopCdmDrugExposure",
      "class": [
        "data.frame"
      ],
      "fields": [
        "drug_exposure_id",
        "person_id",
        "drug_concept_id",
        "drug_exposure_start_date",
        "drug_exposure_end_date"
      ],
      "rows": 8,
      "table": true,
      "tojson": true
    },
    {
      "name": "omopCdmPerson",
      "title": "OMOP CDM Person Sample Data",
      "object": "omopCdmPerson",
      "class": [
        "data.frame"
      ],
      "fields": [
        "person_id",
        "gender_concept_id",
        "year_of_birth",
        "race_concept_id",
        "ethnicity_concept_id"
      ],
      "rows": 12,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "addCohortSubsetDefinition",
      "title": "Add cohort subset definition to a cohort definition set",
      "topics": [
        "addCohortSubsetDefinition"
      ]
    },
    {
      "page": "addCohortTemplateDefintion",
      "title": "Add Cohort template definition to cohort set",
      "topics": [
        "addCohortTemplateDefintion"
      ]
    },
    {
      "page": "addExcludeOnIndexSubsetDefinition",
      "title": "Add exclude on index subset definition",
      "topics": [
        "addExcludeOnIndexSubsetDefinition"
      ]
    },
    {
      "page": "addIndicationSubsetDefinition",
      "title": "Add Indication Subset Definition",
      "topics": [
        "addIndicationSubsetDefinition"
      ]
    },
    {
      "page": "addRestrictionSubsetDefinition",
      "title": "Add Restriction Subset Definition",
      "topics": [
        "addRestrictionSubsetDefinition"
      ]
    },
    {
      "page": "addSqlCohortDefinition",
      "title": "Add an sql cohort definition",
      "topics": [
        "addSqlCohortDefinition"
      ]
    },
    {
      "page": "addUnionCohortDefinition",
      "title": "Add union cohort definition to cohort definition set",
      "topics": [
        "addUnionCohortDefinition"
      ]
    },
    {
      "page": "checkAndFixCohortDefinitionSetDataTypes",
      "title": "Check if a cohort definition set is using the proper data types",
      "topics": [
        "checkAndFixCohortDefinitionSetDataTypes"
      ]
    },
    {
      "page": "CohortSubsetDefinition",
      "title": "Cohort Subset Definition",
      "topics": [
        "CohortSubsetDefinition"
      ]
    },
    {
      "page": "CohortSubsetOperator",
      "title": "Cohort Subset Operator",
      "topics": [
        "CohortSubsetOperator"
      ]
    },
    {
      "page": "CohortTemplateDefinition",
      "title": "Class for automating the creation of bulk cohorts",
      "topics": [
        "CohortTemplateDefinition"
      ]
    },
    {
      "page": "computeChecksum",
      "title": "Computes the checksum for a value",
      "concept": [
        "utils"
      ],
      "topics": [
        "computeChecksum"
      ]
    },
    {
      "page": "computeCohortAttrition",
      "title": "Compute cohort attrition from inclusion rule statistics",
      "topics": [
        "computeCohortAttrition"
      ]
    },
    {
      "page": "createAtcCohortTemplateDefinition",
      "title": "Create ATC Cohort Template Definition",
      "topics": [
        "createAtcCohortTemplateDefinition"
      ]
    },
    {
      "page": "createCohortSubset",
      "title": "Create Cohort Subset Operator",
      "topics": [
        "createCohortSubset"
      ]
    },
    {
      "page": "createCohortSubsetDefinition",
      "title": "Create Subset Definition",
      "topics": [
        "createCohortSubsetDefinition"
      ]
    },
    {
      "page": "createCohortSubsetOperator",
      "title": "A definition of subset functions to be applied to a set of cohorts",
      "concept": [
        "subsets"
      ],
      "topics": [
        "createCohortSubsetOperator"
      ]
    },
    {
      "page": "createCohortTables",
      "title": "Create cohort tables",
      "topics": [
        "createCohortTables"
      ]
    },
    {
      "page": "createCohortTemplateDefintion",
      "title": "Create Cohort Template Definition",
      "topics": [
        "createCohortTemplateDefintion"
      ]
    },
    {
      "page": "createDemographicSubset",
      "title": "Create Demographic Subset Operator",
      "topics": [
        "createDemographicSubset"
      ]
    },
    {
      "page": "createDemographicSubsetOperator",
      "title": "Create createDemographicSubset Subset operator",
      "concept": [
        "subsets"
      ],
      "topics": [
        "createDemographicSubsetOperator"
      ]
    },
    {
      "page": "createEmptyCohortDefinitionSet",
      "title": "Create an empty cohort definition set",
      "topics": [
        "createEmptyCohortDefinitionSet"
      ]
    },
    {
      "page": "createEmptyNegativeControlOutcomeCohortSet",
      "title": "Create an empty negative control outcome cohort set",
      "topics": [
        "createEmptyNegativeControlOutcomeCohortSet"
      ]
    },
    {
      "page": "createLimitSubset",
      "title": "Create Limit Subset Operator",
      "topics": [
        "createLimitSubset"
      ]
    },
    {
      "page": "createLimitSubsetOperator",
      "title": "Create Limit Subset Operator",
      "concept": [
        "subsets"
      ],
      "topics": [
        "createLimitSubsetOperator"
      ]
    },
    {
      "page": "createResultsDataModel",
      "title": "Create the results data model tables on a database server.",
      "topics": [
        "createResultsDataModel"
      ]
    },
    {
      "page": "createRxNormCohortTemplateDefinition",
      "title": "Create Rx Norm Cohort Template Definition",
      "topics": [
        "createRxNormCohortTemplateDefinition"
      ]
    },
    {
      "page": "createSnomedCohortTemplateDefinition",
      "title": "Create SNOMED Cohort Template Definition",
      "topics": [
        "createSnomedCohortTemplateDefinition"
      ]
    },
    {
      "page": "createSubsetCohortWindow",
      "title": "Create a relative time window for cohort subset operations",
      "topics": [
        "createSubsetCohortWindow"
      ]
    },
    {
      "page": "createUnionCohortTemplate",
      "title": "Create cohort template to union multiple cohorts",
      "topics": [
        "createUnionCohortTemplate"
      ]
    },
    {
      "page": "DemographicSubsetOperator",
      "title": "Demographic Subset Operator",
      "topics": [
        "DemographicSubsetOperator"
      ]
    },
    {
      "page": "dropCohortStatsTables",
      "title": "Drop cohort statistics tables",
      "topics": [
        "dropCohortStatsTables"
      ]
    },
    {
      "page": "exportCohortStatsTables",
      "title": "Export the cohort statistics tables to the file system",
      "topics": [
        "exportCohortStatsTables"
      ]
    },
    {
      "page": "exportCohortSubsetStatsTables",
      "title": "Export cohort subset statistics tables to the file system",
      "topics": [
        "exportCohortSubsetStatsTables"
      ]
    },
    {
      "page": "generateCohortSet",
      "title": "Generate a set of cohorts",
      "topics": [
        "generateCohortSet"
      ]
    },
    {
      "page": "generateNegativeControlOutcomeCohorts",
      "title": "Generate a set of negative control outcome cohorts",
      "topics": [
        "generateNegativeControlOutcomeCohorts"
      ]
    },
    {
      "page": "getCohortCounts",
      "title": "Count the cohort(s)",
      "topics": [
        "getCohortCounts"
      ]
    },
    {
      "page": "getCohortDefinitionSet",
      "title": "Get a cohort definition set",
      "topics": [
        "getCohortDefinitionSet"
      ]
    },
    {
      "page": "getCohortInclusionRules",
      "title": "Get Cohort Inclusion Rules from a cohort definition set",
      "topics": [
        "getCohortInclusionRules"
      ]
    },
    {
      "page": "getCohortStats",
      "title": "Get Cohort Inclusion Stats Table Data",
      "topics": [
        "getCohortStats"
      ]
    },
    {
      "page": "getCohortTableNames",
      "title": "Used to get a list of cohort table names to use when creating the cohort tables",
      "topics": [
        "getCohortTableNames"
      ]
    },
    {
      "page": "getCohortValidationCounts",
      "title": "Validate cohort",
      "topics": [
        "getCohortValidationCounts"
      ]
    },
    {
      "page": "getDataMigrator",
      "title": "Get database migrations instance",
      "topics": [
        "getDataMigrator"
      ]
    },
    {
      "page": "getExcludeOnIndexSubsetDefinitionIds",
      "title": "Get Exclude On Index Subset Definition Ids",
      "topics": [
        "getExcludeOnIndexSubsetDefinitionIds"
      ]
    },
    {
      "page": "getIndicationSubsetDefinitionIds",
      "title": "Get Indication Subset Definition Ids",
      "topics": [
        "getIndicationSubsetDefinitionIds"
      ]
    },
    {
      "page": "getLastGeneratedCohortChecksums",
      "title": "Get last generated cohort checksums",
      "topics": [
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      "title": "Get Restriction Subset Definition Ids",
      "topics": [
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