Package: PhenotypeR
Type: Package
Title: Assess Study Cohorts Using a Common Data Model
Version: 0.5.0
Authors@R: c(
    person("Edward", "Burn", , "edward.burn@ndorms.ox.ac.uk", 
    role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9286-1128")),
    person("Martí", "Català", , "marti.catalasabate@ndorms.ox.ac.uk", 
    role = c("aut"), comment = c(ORCID = "0000-0003-3308-9905")),
    person("Xihang", "Chen", , "xihang.chen@ndorms.ox.ac.uk", 
    role = c("aut"), comment = c(ORCID = "0009-0001-8112-8959")),
    person("Marta", "Alcalde-Herraiz", , "marta.alcaldeherraiz@ndorms.ox.ac.uk", 
    role = c("aut"), comment = c(ORCID = "0009-0002-4405-1814")),
    person("Nuria", "Mercade-Besora", , "nuria.mercadebesora@ndorms.ox.ac.uk", 
    role = c("aut"), comment = c(ORCID = "0009-0006-7948-3747")),
    person("Albert", "Prats-Uribe", , "albert.prats-uribe@ndorms.ox.ac.uk", 
    role = "aut", comment = c(ORCID = "0000-0003-1202-9153")))
Description: Phenotype study cohorts in data mapped to the
        Observational Medical Outcomes Partnership Common Data Model.
        Diagnostics are run at the database, code list, cohort, and
        population level to assess whether study cohorts are ready for
        research.
License: Apache License (>= 2)
Encoding: UTF-8
Depends: R (>= 4.1.0)
Suggests: CDMConnector (>= 1.6.1), duckdb, DBI, gt, omock, testthat (>=
        3.0.0), knitr, glue, RPostgres, ggplot2, stringr, shiny (>=
        1.11.1), DiagrammeR, DiagrammeRsvg, reactable, rsvg, sortable,
        shinycssloaders, here, DT, bslib, shinyWidgets, plotly, tidyr,
        scales, usethis, rmarkdown, CohortSurvival (>= 1.1.0), ellmer,
        htmltools, visOmopResults (>= 1.4.2), rsconnect, cpp11,
        progress, qs2, lubridate, systemfonts, officer, fs,
        OmopConstructor, tools, jsonlite, jsonvalidate, shinyjs
Config/testthat/edition: 3
RoxygenNote: 7.3.3
Imports: cli, clock, CodelistGenerator (>= 4.0.2),
        CohortCharacteristics (>= 1.1.3), CohortConstructor (>= 0.6.2),
        dplyr, DrugUtilisation (>= 1.1.0), IncidencePrevalence (>=
        1.2.0), MeasurementDiagnostics (>= 0.3.0), omopgenerics (>=
        1.2.0), OmopSketch (>= 1.0.1), PatientProfiles (>= 1.4.5),
        purrr, readr, rlang, vctrs
URL: https://ohdsi.github.io/PhenotypeR/
BugReports: https://github.com/OHDSI/PhenotypeR/issues
VignetteBuilder: knitr
Config/testthat/parallel: true
Roxygen: list(markdown = TRUE)
Config/pak/sysreqs: libicu-dev libssl-dev libx11-dev
Repository: https://ohdsi.r-universe.dev
Date/Publication: 2026-08-02 16:29:48 UTC
RemoteUrl: https://github.com/ohdsi/phenotyper
RemoteRef: HEAD
RemoteSha: 60f6ebf37dc0615557fe85885b1cefade32861bc
NeedsCompilation: no
Packaged: 2026-09-26 10:00:10 UTC; root
Author: Edward Burn [aut, cre] (ORCID: <https://orcid.org/0000-0002-9286-1128>),
  Martí Català [aut] (ORCID: <https://orcid.org/0000-0003-3308-9905>),
  Xihang Chen [aut] (ORCID: <https://orcid.org/0009-0001-8112-8959>),
  Marta Alcalde-Herraiz [aut] (ORCID:
    <https://orcid.org/0009-0002-4405-1814>),
  Nuria Mercade-Besora [aut] (ORCID:
    <https://orcid.org/0009-0006-7948-3747>),
  Albert Prats-Uribe [aut] (ORCID:
    <https://orcid.org/0000-0003-1202-9153>)
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>