The OmopViewer
package will display by default the ‘tidy’ tab that will allow the user
to explore the data. With the tidy tab there will be displayed different
output tabs. By default a table created with
OmopViewer::omopViewerTable() will be displayed, but some
packages have some extra output tabs configured. In the following table
you can see the result_type that are configured and which
are the visualisations.
| Result type | Function | Output type |
|---|---|---|
| CohortCharacteristics | ||
| summarise_cohort_overlap | tableCohortOverlap | gt |
| plotCohortOverlap | ggplot2 | |
| summarise_cohort_attrition | tableCohortAttrition | gt |
| plotCohortAttrition | grViz | |
| summarise_cohort_timing | tableCohortTiming | gt |
| plotCohortTiming | ggplot2 | |
| summarise_characteristics | tableCharacteristics | gt |
| plotCharacteristics | ggplot2 | |
| summarise_cohort_count | tableCohortCount | gt |
| plotCohortCount | ggplot2 | |
| CodelistGenerator | ||
| orphan_code_use | tableOrphanCodes | gt |
| cohort_code_use | tableCohortCodeUse | gt |
| code_use | tableCodeUse | gt |
| achilles_code_use | tableAchillesCodeUse | gt |
| OmopSketch | ||
| summarise_observation_period | tableObservationPeriod | gt |
| plotObservationPeriod | ggplot2 | |
| summarise_omop_snapshot | tableOmopSnapshot | gt |
| IncidencePrevalence | ||
| incidence | tableIncidence | gt |
| plotIncidence | ggplot2 | |
| incidence_attrition | tableIncidenceAttrition | gt |
| prevalence | tablePrevalence | gt |
| plotPrevalence | ggplot2 | |
| prevalence_attrition | tablePrevalenceAttrition | gt |
| DrugUtilisation | ||
| summarise_dose_coverage | tableDoseCoverage | gt |
| summarise_drug_restart | tableDrugRestart | gt |
| plotDrugRestart | ggplot2 | |
| summarise_drug_utilisation | tableDrugUtilisation | gt |
| summarise_indication | tableIndication | gt |
| plotIndication | ggplot2 | |
| summarise_proportion_of_patients_covered | tableProportionOfPatientsCovered | gt |
| plotProportionOfPatientsCovered | ggplot2 | |
| summarise_treatment | tableTreatment | gt |
| plotTreatment | ggplot2 | |
If you wish to configure a new result_type this can be
done editing the internal data: omopViewerTabs,
omopViewerOutput and omopViewerOutputArguments in file
internalData.R.
Please feel free to submit your PR.