NEWS

OmopSketch 1.0.1.900

OmopSketch 1.0.1 (2026-02-06)

Remove deprecated internal functions and add tests by @catalamarti in #525
Update deprecated function tests for specific DB by @catalamarti in #532
summarieClinicalRecords to work with all clinical tables by @cecicampanile in #533
update tables and test tables by @cecicampanile in #535
Improve tableConceptIdCounts.R by @cecicampanile in #538
dont test database characteristics with age group when cdm is local by @cecicampanile in #540
plot functions updated by @cecicampanile in #534
fix integer overflow in sql server by @cecicampanile in #542
attempt fix for bigint concept count by @edward-burn in #543
without grouping by @edward-burn in #548
Update tablePerson.R by @cecicampanile in #550
separate standard, non standard and 0 in summariseClinicalRecords by @cecicampanile in #547
Print big int by @cecicampanile in #553
hide, header and group arguments in tables by @cecicampanile in #551

OmopSketch 1.0.0 (2025-11-19)

Characterise all mock datasets by @catalamarti #430
background in shiny by @cecicampanile #431
shiny name shiny -> OmopSketchShiny by @catalamarti #432
fix plot of characterisation of population in shiny by @cecicampanile #437
new function: summariseTrend by @cecicampanile #433
add cdm_source in summariseOmopSnapshot by @catalamarti #438
new function: summarisePerson by @catalamarti #440
summariseObservationPeriod 1.0.0 by @cecicampanile #446
summariseClinicalRecords 1.0 by @cecicampanile #443
missingness in shiny characteristics by @cecicampanile #450
sql translations by @catalamarti #449
style argument in table and plot functions by @cecicampanile #451
Fix: Ensure database compatibility for boolean aggregations in summariseNumeric2 by @merqurio #457
Fix documentation for plotObservationPeriod by @cecicampanile #460
tableObservationPeriod when byOrder = FALSE by @cecicampanile #459
summariseObservationPeriod minor fix by @cecicampanile #463
check for person id not in person table in summariseClinicalRecords by @cecicampanile #461
fix some test failures by @cecicampanile #469
In observation argument by @cecicampanile #470
update shinyCharacteristics #454
sample to work on the person level by @cecicampanile #458
tableConceptIdCounts update by @cecicampanile #476
captions in tables by @cecicampanile #477
summarisePerson in databaseCharacteristics and shinyCharacteristics by @cecicampanile #478
Reduce imports by @catalamarti #503
Remove :: from vignettes, readme and examples by @catalamarti #502
Use default of style and type = NULL by @catalamarti #498
Tidy vignettes by @catalamarti i#508
Tidy documentation by @catalamarti #510
refine readme by @catalamarti #505
scarlet brand in shiny by @cecicampanile #513
Test multiple dbms by @catalamarti #514
add logo to shiny by @catalamarti #516
reduce size of tables before collecting in summariseTrend by @cecicampanile #518

OmopSketch 0.5.1 (2025-06-19)

removed overall results when plotting trends by @cecicampanile #418

OmopSketch 0.5.0 (2025-06-18)

Table top concept counts by @cecicampanile @catalamarti #392
summariseTableQuality function by @cecicampanile #396
specify arguments in examples and deprecate summariseConceptSetCounts by @cecicampanile #397
In summariseObservationPeriod age computed after trimming to the study period by @cecicampanile #403
summariseInObservation refactoring by @cecicampanile #390
fixed warnings in tests by @cecicampanile #399shinyCharacteristics() function by @cecicampanile #401
observation period functions to work with temp tables by @cecicampanile #400
eunomia vocabulary in mockOmopSketch.R by @cecicampanile #398
tableQuality() function by @cecicampanile #406
summariseTableQuality in databaseCharacteristics() by @cecicampanile #407
use shinyCharacteristics() to generate the shiny deployed in the website by @cecicampanile #415
Improve tableClinicalRecords.R by @cecicampanile #417
Documentation by @cecicampanile #416

OmopSketch 0.4.0 (2025-05-15)

"sex" and "age" output in summariseInObservation by @cecicampanile #358
source concept in summariseConceptIdCount and tableConceptIdCounts by @cecicampanile #362t
ableInObservation and tableRecordCount by @cecicampanile #363
databaseCharacteristics() function by @cecicampanile #330
Table Record Count and In Observation by @cecicampanile #363
Add new examples by @elinrow #376Vignette explaining missing data functions by @elinrow #375
Update "Summarise observation period" vignette by @cecicampanile #377
Update "Summarise clinical tables records" by @cecicampanile #378
Create shiny app with characterisation of synthetic data by @catalamarti #381
"Summarise concept count" vignette by @cecicampanile #379
Update vocabulary version in summariseOmopSnapshot() by @cecicampanile #383

OmopSketch 0.3.2 (2025-04-14)

remove dplyr::compute() from sampleOmopTable() by @cecicampanile #344
option to summarise by person in summariseInObservation by @cecicampanile #345
counts of 0 in summariseMissingData by @cecicampanile #346
x ax ordered by observation period ordinal in plotObservationPeriod by @cecicampanile #348
byOrdinal boolean argument in summariseObservationPeriod by @cecicampanile #349
bug that was showing percentages over 100 fixed in summariseClinicalRecords by @cecicampanile #350

OmopSketch 0.3.1 (2025-03-16)

remove dplyr::collect() from summariseClinicalRecords() by @cecicampanile #328
bug with time_interval fixed in summariseMissingData() by @cecicampanile #335
improved tableConceptIdCounts by @cecicampanile #336
arranged variable_name and variable_level in tableClinicalRecords by @cecicampanile #337

OmopSketch 0.3.0 (2025-03-04)

eunomiaIsAvailable instead of the deprecated eunomia_is_available by @cecicampanile #316
Account for int64 in summariseInObservation by @cecicampanile #312
Add "datatable" as possible table type by @cecicampanile #314
Interval argument in summariseMissingData and summariseConceptIdCounts, year argument deprecated by @cecicampanile #317
Only records in observation are accounted in summariseConceptIdCounts and summariseConceptSetCounts by @cecicampanile #319
vignette with full characterisation and shiny by @cecicampanile #325
in summariseInObservation and summariseObservationPeriod study range is now applied with cohortConstructor::trimToDateRange instead of requireInDateRange by @cecicampanile #325