Changes in version 3.7.1 (2026-05-27) Changes: 1. more robust unit-test for bootstrapping Changes in version 3.7.0 (2026-02-28) Changes: 1. implement Schoenfeld residuals for Cox models with ties (Breslow) and strata 2. implement score-test of Cox proportionality for models with ties (Breslow) and strata 3. fix covariate type in confint() output 4. remove use of Rf_error() that can cause memory leaks Changes in version 3.6.0 (2025-07-18) Changes: 1. resurrect boot-strapping 2. add JNI interface for manipulating Cyclops objects in an across-language persistent cache 3. add cyclopsGetLogLikelihoodGradient() Changes in version 3.5.2 (2025-06-24) 1. fix cyclic dependency with SelfControlledCaseSeries in a test-unit Changes in version 3.5.1 (2025-04-11) Changes: 1. check for negative curvature before computing CIs a. change to "lange"-convergence when needed 2. fix vcov when model has an offset 3. fix profiling when in bad initial state 4. sort output of predict for compatibility with Andromeda:duckbd Changes in version 3.5.0 (2024-12-02) Changes: 1. provide optional (optimalWarmStart = FALSE) more parallelization when profiling likelihood 2. make maxResets a function parameter 3. ensure compatibility with R v4.4 Changes in version 3.4.1 (2024-06-06) Changes: 1. fix some NaN/-Inf inconsistencies with likelihood profiling Changes in version 3.4.0 (2023-10-30) Changes: 1. remove dependence on BH 2. improvements on adaptive likelihood profiling 3. add auto option to cvRepetitions 4. bumped explicit C++11 requirement up to R v4.1 5. removed deprecated use of dbplyr:::$.tbl_lazy a. breaking change in dbplyr v2.4.0 Changes in version 3.3.1 (2023-04-11) Changes: 1. fix uninitialized value in detected in computeAsymptoticPrecisionMatrix(); value was priorType 2. fix memory leak caused by call to ::Rf_error() 3. fix line-endings on Makevar on windows Changes in version 3.3.0 (2023-04-05) 1. bump for R 4.2 2. fix CRAN warnings a. used minValues 3. fix CRAN notes a. remove explicit dependence on C++11 (except for R <= 4.0) Changes in version 3.2.1 (2022-08-10) Changes: 1. fix small memory leak caused by direct call to '::Rf_error()' 2. disable JVM calls on CRAN due to uninitialized memory in Java JVM Changes in version 3.2.0 (2022-06-30) Changes: 1. fixed likelihood profiling when non-convex due to numerical instability 2. fixed parsing of 64-bit covariate IDs 3. fix BLR convergence criterion when there are 0 (survival) events 4. add Jeffrey's prior for single regression coefficient Changes in version 3.1.2 (2021-06-16) Changes: 1. adaptive likelihood profiling when objective function is concave. Changes in version 3.1.1 (2021-03-23) Changes: 1. specify new option nocenter in survival package when testing predicted hazard function Changes in version 3.1.0 (2020-11-05) Changes: 1. implement Fine-Gray competing risks regression 2. fixed getCyclopsProfileLogLikelihood when starting with extreme coefficients Changes in version 3.0.0 (2020-06-05) Changes: 1. switch to Andromeda from ff to hold large datasets. This change breaks API Changes in version 2.0.4 Changes: 1. removed, unused variable imputation functions that contained a std::exit Changes in version 2.0.3 (2020-04-11) Changes: 1. fix computation under conditional Poisson models by reverting to v1.3.4-style loop 2. fix several unit-tests for compatibility with R 4.0 factors 3. add ability to profile likelihood function in parallel 4. add initial infrastructure for competing risks models Changes in version 2.0.2 (2019-03-17) Changes: 1. use RNGversion("3.5.0") in unit-tests to reproduce old RNG behavior 2. fix prior-type checks when specifying multiple types Changes in version 2.0.1 (2018-09-23) Changes: 1. patch two memory leaks in ModelData.cpp and ModelSpecifics.hpp Changes in version 2.0.0 (2018-09-18) Changes: 1. simplify internal transformation-reductions loops 2. implemented non-negative weights 3. allow for run-time selection of 32-/64-bit reals 4. remove dependence on GNUmake 5. temporarily remove dependence on RcppParallel (until TBB is again R-compliant) Changes in version 1.3.4 (2018-06-15) Changes: 1. fix undeclared dependencies in unit-tests: MASS and microbenchmarks 2. fix issues with ATLAS compilation 3. add contexts to testthat files 4. fix ASAN errors in AbstractModelSpecifics Changes in version 1.3.3 Changes: 1. fix testthat expected error message Changes in version 1.3.2 (2018-05-04) Changes: 1. explicitly includes header, needed for R 3.5 builds 2. remove pragma statements used to quiet RcppEigen and RcppParallel Changes in version 1.3.1 Changes: 1. fixes covariate indices returned from .checkCovariates when excluding covariates from regularization Changes in version 1.3.0 (2017-08-23) Changes: 1. implements specialized priors through callbacks for use, for example, in the BrokenAdaptiveRidge package to provide L0-based model selection 2. implements specialized control through callbacks for use, for example, auto-and-grid-based cross-validation hyperparameter searches 3. removes src/boost that clashes with BH 1.65.0 Changes in version 1.2.3 Changes: 1. fixed predict error with ff.data.frame with size == 0 Changes in version 1.2.2 (2016-10-06) Changes: 1. fixed solaris build errors 2. added compatibility for C++14 (make_unique) 3. fixed multiple ASan warnings Changes in version 1.2.0 (2016-08-01) Changes: initial submission to CRAN